Transcript Information: R_Transcript_337972.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value8E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.10550844482496
Replicate 20.1213658983601
Replicate 30.13240888783903
Condition 2: 8 Hour
Replicate 10.28307358320515
Replicate 20
Replicate 30.52461302371061
Condition 3: 24 Hour
Replicate 10.13270408802141
Replicate 20.12748704561027
Replicate 30.12651852420172


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_337972.p1 GENE.R_Transcript_337972~~R_Transcript_337972.p1 ORF type:5prime_partial len:173 (+),score=25.12 R_Transcript_337972:3-521(+)
TTATCTCAATCAGGTTTGTCCATTGATGCTTATTTTGGTCGCTTGAAAATTCTCTATGATGAACTTAATGGCTATCTTGAAAACCCGGAGTGTATTTGCGGCAAGTGTGTATGTCATAATGCTGCCAAGGTTGTCCTTCGTGAGCGTGAAACCGAGCACCTTCACAGGTTCCTTATAGGCCTTGATCGCGCAGCATATGAGACCACTCGGTCAAACATCCTTAGTCTTCATCCCTTGCCGGATTTGGATGGTGCCTATGCTATTGTTTCCAGAGAAGAAACCCATCAAGAAGTGGGTCGGGCAAAAGAAGAACACACCGAAGCTGTCGGCTTTGTTGCCCAGGCCGCTACGTCGTCACAGTCTCAAATCAGTCCTTCAGCCTCATCTCCCCAGGTTTCATCTGCCCATACCCGTGATCGACCTCACTGTGTCTTTTGCACACGCATGGGACATGAGGTTCAGAATTGCTATCAACTCTTTGACTTCCCTGATGATGATTCCAGCTCTACTTGTGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_337972.p1 GENE.R_Transcript_337972~~R_Transcript_337972.p1 ORF type:5prime_partial len:173 (+),score=25.12 R_Transcript_337972:3-521(+)
LSQSGLSIDAYFGRLKILYDELNGYLENPECICGKCVCHNAAKVVLRERETEHLHRFLIGLDRAAYETTRSNILSLHPLPDLDGAYAIVSREETHQEVGRAKEEHTEAVGFVAQAATSSQSQISPSASSPQVSSAHTRDRPHCVFCTRMGHEVQNCYQLFDFPDDDSSSTCG*

Click here to download the sequence:
Link to NCBI Protein BLAST