Transcript Information: R_Transcript_340123.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value4E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.036579080069577
Replicate 20
Replicate 30.045905285763833
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.072751946374297
Condition 3: 24 Hour
Replicate 10.092015259429676
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_340123.p1 GENE.R_Transcript_340123~~R_Transcript_340123.p1 ORF type:internal len:499 (-),score=97.41,rve|PF00665.22|3.1e-20,gag_pre-integrs|PF13976.2|9.2e-13 R_Transcript_340123:1-1494(-)
GAAGGAAAGCTCTCCATGGATGGCGTCACCGACAGCCTATTGAATGAAGAGTCAAGGAGAAAAGAGCGTGAAATCTCTGGTCGATTAGAGGCCAATGTCATCGAGAATCGAGGAAGAAGCGAGACTCGAGGAAGGAATAACACTAGGGGTCATGACAGGTCAAGGGGTCGGTCTAAGTCACGATCAAAGATCACATGTTATTATTGTGGCAAGCCTGGCCACAAGAAATCTGAATGTCGAAGTTACAAGAGAGATCAAAAGAATGGATCCGTCAAGCCCGACACCATCGACCCCAAGAAGAAAGAAGATAAGAGCACAACAGCCTTGGCAATGAATGATGTAGATGATGTTTTTCTCATTGGTGAAGACAATTATCTCAACATCGCAGACAATGATTGCTCATGGATTGTTGATTCGGGTGCTTCTTTCCATGTCACCCCACATCAAGAGTTCTTTTCATCGTACCAAGTTGGTGATTTCGGTACCGTGAAGATGGGAAATCAAGTTTCAAGCAAGATCGTGGGGATAGGTACTGTCAATCTTATAACCAACACAGGATGTGAACTGTTGTTGAAGGATGTGAGACATGTTCCAGACATGCGTCTCAACCTCATCTCAGCTGGGAAGCTAGATGATGCTGGGTATATGAATAGCTTCGGTGCAGGAAAATGGAAACTCACAAGAAGTAGCATTATAGTGGCTCGAGGAAGAAAAGAAGGCTCATTGTATGTTACACAAGCCAAGCTGTGCAAGGGGGAGACTAATGTTGCTCATGATAATTCGTGCTTGGAGATATGGCACAAGAGATTGGGACATATGAGTGAGAAGGGTTTGCAGGTCCTTACTCGCAAAGAGCTCCTCTCAGATATGAAAGGTAAAACTCTTGAGCGCTGCACTCATTGTTTGGCTGGAAAACAACATAGAGTTTCATTTTCTAGAAGCAATCCTCCAAGAAGAAGAAGCCATGTTCTTGATTTGGTTCACACCAATGTATGCTCGATGACCGAGAAATCACTAGGTGGTGCATCATATTTTGTGACATTCATCGACAACCACTCAAGAAAGGTGTTCGTGTCTTTGTTAAAGACTAAAGATCAGGTGCTCGAGTCATTTAAGGAGTTCCATGCTCGAGTGGAGCGTGAAACAGGAAGAAAGCTCAAGTGCGTTCGAGCTGACAATGGTGGAGAGTATCGTGGTCCATTCGAGACATATTGCAAGCAACATGGCATCAGGCTGGAGAAGACTCCTCCAAAAACACCACAGTTGAATGGGGTAGCTGAAAGAATGAACCGAACCATAGAAGAAAGAGTCCTATGCATGCTCTCGAATGCCAAGCTACTTAAGTCATTTTGGGGAGAAGCTGTGAAGACTGCTGTCCATATCATAAATTACTCACCTTCAGGCCCTTTGGATGGTGAAATCCCCGAGGAAGCATGGACAGGTAAAAAGGTCTCATATGACCAATTCAAGGTGTTTGGATGTCGAGCATTCGTC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_340123.p1 GENE.R_Transcript_340123~~R_Transcript_340123.p1 ORF type:internal len:499 (-),score=97.41,rve|PF00665.22|3.1e-20,gag_pre-integrs|PF13976.2|9.2e-13 R_Transcript_340123:1-1494(-)
EGKLSMDGVTDSLLNEESRRKEREISGRLEANVIENRGRSETRGRNNTRGHDRSRGRSKSRSKITCYYCGKPGHKKSECRSYKRDQKNGSVKPDTIDPKKKEDKSTTALAMNDVDDVFLIGEDNYLNIADNDCSWIVDSGASFHVTPHQEFFSSYQVGDFGTVKMGNQVSSKIVGIGTVNLITNTGCELLLKDVRHVPDMRLNLISAGKLDDAGYMNSFGAGKWKLTRSSIIVARGRKEGSLYVTQAKLCKGETNVAHDNSCLEIWHKRLGHMSEKGLQVLTRKELLSDMKGKTLERCTHCLAGKQHRVSFSRSNPPRRRSHVLDLVHTNVCSMTEKSLGGASYFVTFIDNHSRKVFVSLLKTKDQVLESFKEFHARVERETGRKLKCVRADNGGEYRGPFETYCKQHGIRLEKTPPKTPQLNGVAERMNRTIEERVLCMLSNAKLLKSFWGEAVKTAVHIINYSPSGPLDGEIPEEAWTGKKVSYDQFKVFGCRAFV

Click here to download the sequence:
Link to NCBI Protein BLAST