Transcript Information: R_Transcript_34219.p1


Annotated TAIR IDAT5G50280.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)EMB1006
Annotation TypeOrtholog
Chromosome Positionchr5:20459238-20461504 | Forward length=723
E-Value6E-282
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.6590049342231
Replicate 20.95582551212282
Replicate 31.5294331627173
Condition 2: 8 Hour
Replicate 11.7463363467686
Replicate 21.6626452355358
Replicate 32.4514314798398
Condition 3: 24 Hour
Replicate 12.090240415269
Replicate 21.8407272215201
Replicate 32.9892161180892


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_34219.p1 GENE.R_Transcript_34219~~R_Transcript_34219.p1 ORF type:complete len:659 (+),score=172.78,PPR_2|PF13041.2|1.7e+02,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|0.063,PPR_2|PF13041.2|0.035,PPR_2|PF13041.2|2.7e-15,PPR_2|PF13041.2|4.3e-11,PPR_2|PF13041.2|1.3e-09,PPR_2|PF13041.2|1.3e-10,PPR_2|PF13041.2|2.7e-10,PPR_2|PF13041.2|2e-11,PPR_2|PF13041.2|2.6e-06,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|32,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|1.4e-06,PPR_3|PF13812.2|0.00045,PPR_3|PF13812.2|0.00069,PPR_3|PF13812.2|0.0033,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|0.078,PPR_3|PF13812.2|0.00031,PPR_3|PF13812.2|0.013,PPR|PF01535.16|1.4e+03,PPR|PF01535.16|1.6e+03,PPR|PF01535.16|0.053,PPR|PF01535.16|17,PPR|PF01535.16|61,PPR|PF01535.16|1e-08,PPR|PF01535.16|0.00043,PPR|PF01535.16|0.069,PPR|PF01535.16|2e-06,PPR|PF01535.16|0.06,PPR|PF01535.16|0.00028,PPR|PF01535.16|0.0037,PPR|PF01535.16|0.00062,PPR_1|PF12854.3|1.6e+03,PPR_1|PF12854.3|33,PPR_1|PF12854.3|2.1e+02,PPR_1|PF12854.3|14,PPR_1|PF12854.3|3e-10,PPR_1|PF12854.3|1.4,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|0.007,PPR_1|PF12854.3|0.87,PPR_1|PF12854.3|0.0087,PPR_1|PF12854.3|0.00017,PPR_1|PF12854.3|0.054,ECSIT|PF06239.7|5.1,ECSIT|PF06239.7|0.24,ECSIT|PF06239.7|22 R_Transcript_34219:256-1977(+)
ATGGAGGAAAATGTTGATCTGGGTTTTGATGGGGCCCCCAAAATTGAGGGTGTTGTAGGGGAAATTCTGGGTCTTGCGAGGGACTTGCCCGAGAACTCGACTTTGGGGGAGCATTTGGGGAAGTATGAAGGAGGGAAAGTAGGGGAGAAAGAGTGTGCGGAGGTGTTGGGTTTGTTGTGTAAGGAAGGATTGATGATGAGTTGTTTGTATTTTTATGAATGGATGGCATTGCAAGAGCCCACCTCACTTGTTACTCCTAGGGCTTGTTCTGTGCTTTTTCCTGCCTTGGGGAAGGCTGGTATGGGTGATAAGCTTATGATTTTGTGGAGGAATTTGCCCCTTAATAGTAGGGATTTCAGGGATGTGCATGTTTATAATGCTGCTTTGTCTGGTTTGCTTTCCAGTGAGAGGTATGAGGATGCTTGGAAGGTGTATGAGACAATGGAGATGAATAATATCTTGCCAGATCGTGTGACAGGTTCTGTTATGATTACTATCATGCGGAAGGAAGGGAGGAGTGCCAAAGATGCGTGGGAGTTTTTTGAGCGAATGAATAGAAAAGGAGTCAAATGGAGTTTGGAGATAATAGGAGCTCTGATCAAATCTTTTTGTGATGAGGGACTCCAGAAGCAAGCCCTTATTATTCAAGCAGAGATGGAGAAGAGAGGGATATCCTCAAATGCTATAATATATAACACTCTTATGGATGCCTATTGTAAGTCCAACCATCTTGAAGAAGCTGAAGCTCTCTTTACAGAGATGAAAGACAAAAAGCTTTTGCCTACTTGTGCCACCTACAACATTTTTCTTGATGCATACAGCAAAAGGATGCAGCCAGAGATTGTTGAAAAACTTCTCCAAGAAATGCAAAATGCTGGCCTCAAACCAAATGTCAAATCATACACAAGCTTGATAAGTGCATATGGGAGGCAGAAGAACATGAGTGATATGGCTGCTGATGCATTTTTGAGGATGAAGAAGGCTGGTATAAAACCAACTTCGCATTCATATACTGCTCTAATCCATGCGTATTCAGTAAGTGGATGGCATGAGAAAGCCTACAAAGCATTTGAGAACATGCAGAGGGAAGGAATTAAACCATCTATAGAAACATATACTGCTTTGCTTGATGCATTTAGGCGGGCTGGGGATGCCCAAACACTAATGGCTATATGGAAGTCCATGATTCGTGAGAAAGTTGGAGGAACTCGGGTTACTTTCAACATTCTCCTCGATGGGTTTGCAAAGCAAGGCCAGTATGTGGAAGCAAGAGATGTGATATGTGAATTTGGGAAGATTGGCTTCCAACCAACAGTGATGACCTATAATATGCTAATAAATGCATATGCAAGAGGAGGACAACACCTGAAGTTACCACAGTTGTTAAGGGAGATGGCAGCTCTGAATTTAAAACCTGATTCAATCACATATTCTACAATGATTTACGCATTTGTCCGTGTTCGGGATTACAAAAGGGCATTTTTTTACCACAAGCAAATGGTGAAGAGTGGGCAAGTTCCAGACGTTAAATCCTATCAGAAACTGAGAGCAATCTTGGATATAAAAGCTTCCATAAAGAACAAGAAGGACAGAAATGCCATACTTGGTATAGTTAGTAGCAAACTGGGTATGTTGAAGGCTAAAAAGAAAAGTAAGAAAGATGAGTTCTGGAAGAACAAGAAGAAAAACAGAAGAACAAATGGCTCTCCTCAGGTTAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_34219.p1 GENE.R_Transcript_34219~~R_Transcript_34219.p1 ORF type:complete len:659 (+),score=172.78,PPR_2|PF13041.2|1.7e+02,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|0.063,PPR_2|PF13041.2|0.035,PPR_2|PF13041.2|2.7e-15,PPR_2|PF13041.2|4.3e-11,PPR_2|PF13041.2|1.3e-09,PPR_2|PF13041.2|1.3e-10,PPR_2|PF13041.2|2.7e-10,PPR_2|PF13041.2|2e-11,PPR_2|PF13041.2|2.6e-06,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|32,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|1.4e-06,PPR_3|PF13812.2|0.00045,PPR_3|PF13812.2|0.00069,PPR_3|PF13812.2|0.0033,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|0.078,PPR_3|PF13812.2|0.00031,PPR_3|PF13812.2|0.013,PPR|PF01535.16|1.4e+03,PPR|PF01535.16|1.6e+03,PPR|PF01535.16|0.053,PPR|PF01535.16|17,PPR|PF01535.16|61,PPR|PF01535.16|1e-08,PPR|PF01535.16|0.00043,PPR|PF01535.16|0.069,PPR|PF01535.16|2e-06,PPR|PF01535.16|0.06,PPR|PF01535.16|0.00028,PPR|PF01535.16|0.0037,PPR|PF01535.16|0.00062,PPR_1|PF12854.3|1.6e+03,PPR_1|PF12854.3|33,PPR_1|PF12854.3|2.1e+02,PPR_1|PF12854.3|14,PPR_1|PF12854.3|3e-10,PPR_1|PF12854.3|1.4,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|0.007,PPR_1|PF12854.3|0.87,PPR_1|PF12854.3|0.0087,PPR_1|PF12854.3|0.00017,PPR_1|PF12854.3|0.054,ECSIT|PF06239.7|5.1,ECSIT|PF06239.7|0.24,ECSIT|PF06239.7|22 R_Transcript_34219:256-1977(+)
MEENVDLGFDGAPKIEGVVGEILGLARDLPENSTLGEHLGKYEGGKVGEKECAEVLGLLCKEGLMMSCLYFYEWMALQEPTSLVTPRACSVLFPALGKAGMGDKLMILWRNLPLNSRDFRDVHVYNAALSGLLSSERYEDAWKVYETMEMNNILPDRVTGSVMITIMRKEGRSAKDAWEFFERMNRKGVKWSLEIIGALIKSFCDEGLQKQALIIQAEMEKRGISSNAIIYNTLMDAYCKSNHLEEAEALFTEMKDKKLLPTCATYNIFLDAYSKRMQPEIVEKLLQEMQNAGLKPNVKSYTSLISAYGRQKNMSDMAADAFLRMKKAGIKPTSHSYTALIHAYSVSGWHEKAYKAFENMQREGIKPSIETYTALLDAFRRAGDAQTLMAIWKSMIREKVGGTRVTFNILLDGFAKQGQYVEARDVICEFGKIGFQPTVMTYNMLINAYARGGQHLKLPQLLREMAALNLKPDSITYSTMIYAFVRVRDYKRAFFYHKQMVKSGQVPDVKSYQKLRAILDIKASIKNKKDRNAILGIVSSKLGMLKAKKKSKKDEFWKNKKKNRRTNGSPQVS*

Click here to download the sequence:
Link to NCBI Protein BLAST