Transcript Information: R_Transcript_343993.p1


Annotated TAIR IDAT3G09510.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:2921804-2923258 | Forward length=484
E-Value6.3E-39
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.87010936754486
Replicate 20.77846452814664
Replicate 30.63090590836861
Condition 2: 8 Hour
Replicate 10.4150146601228
Replicate 20.97118236810234
Replicate 31.3652164767452
Condition 3: 24 Hour
Replicate 10.92414901975928
Replicate 20.67754502947748
Replicate 30.99700349739045


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_343993.p1 GENE.R_Transcript_343993~~R_Transcript_343993.p1 ORF type:complete len:944 (+),score=119.45,RVT_1|PF00078.23|5.7e-39,zf-RVT|PF13966.2|3.9e-18,RVT_3|PF13456.2|4.7e+02,RVT_3|PF13456.2|7.5e+03,RVT_3|PF13456.2|1.7e+03,RVT_3|PF13456.2|3.5e-14 R_Transcript_343993:1005-3836(+)
ATGAATGCGATTTTGGACGCAGAGCCTACACACGAGGAAATCTTTAACGCTCTTAACCAAATGCACCCAAAGAAAGCGCCTGGCCCAGATGGTATGCATGCACTTTTCTTTCAAAAATTCTGGCATATAGTTGGGGCAGATCTGATAGCCTATGTCAAGTCTTGGTGGAATGGGAAAGAGGACCTGAGCTCTATCAACACCACTAATATTGTGTTAATCCCCAAAACCAAAGATCCAAAACGCATGATTGAATTCCGACCCATTAGTTTATGTAATGTGCTCTATAAAATCATCTCCAAAACCCTAGCTAATAGACTTAAGAAACTCCTTCCCCTCATTGTTTCTGAAAACCAAAGTGCTTTCATCTCTGGGAGATCGATCACTGACAATGCTTTGGTAGCTTTTGAAATTTTTCATTCTATGAAACACAAAAAAGGGAGGAAAGGGACTATGGCTTTAAAGTTAGACATGCGTAAGGCATATGATAGAATTGAGTGGGTTTTTTTGGAAAAAGTCATGTTAAAGTTGGGCTTTGGAAATGCTTGGGTCAATCGGGTGATGCAGTGGCAGCAGTGCCTTAGAAGTGTATCCTTTGCTTGTGTCATCAATGGGCAGCAGAGAGGTAGGATCAGACCAACGAGGGGCCTCCGACAAGGAGATCCCATGTCACCTTACCTCTTCATTTTATGTGCAGATGCTTTTTCCACCTTATTGGAAAAGGCGGCTATGAGAAAGAAGATACATGGAGCGTGTGTTTGTCGGGGTGCACCAGCTGTTTCTCACCTGTTTTTTGCTGATGACAGCATTCTCTTTTCCAGAGCAACTACACAAGAATGCGCTAAGATTGCAGATATCATAGCATTGTATGAAAGAGCATCGGGGCAAAAAGTAAACTTTGATAAGACCGAGGTGGCTTTCAGCGCAAATGTGCGGAGCACCTCTCGTGATGCTATTCGAAGGCTACTGAATGTCCGCGAAGTTGAGCGCCATGAGAAATATCTTGGACTCCCAACAGCGATCGGTAGATCAAAGAAAGCAGTTTTTGCGGGTCTTAAGGAGCGAATATGGAAAAAAGTACAAGGCTGGAAGGAAAAATTACTCTCTAAGCCGGGCAAAGAAGTGCTAATCAAGTCGATAGTTCAAGCCATCCCAACATATGTTATGAGTATTTTCAGACTACCAGATGGGTTGTGTGAGGAGATACAGGGTCTCATGGCAAAATTCTGGTGGGGAAGCACGGAAGAAAAGAGGAAAATGCATTGGAAAAGCTGGGATAAGCTCTGTCTCCCAAAATCTCATGGTGGCTTGGGATTCAGGGATATAAAAACTTTCAACCAGGCACTCCTGGCAAAACAAGCTTGGCGTCTCACTAATGGGGAAAATTCACTCCTCCACAGAGTGCTGAAGGCAAGGTATTACAAGAATTCAGACTTTGTAAGCTCCTTTCTGGGCTCTAATCCAAGCTATACATGGAGGAGCATTTGGGGCTCAAAATCCTTATTGCTTGAAGGGCTCAAATGGAGGGTAGGTAATGGCGTGGACATCAATGTGTTCACCGAGGCTTGGCTCCCGGGCGACTCATCCGTGGTGGTCCCAACATCCAATAATGAGAATATGGCGCAACTGCGAGTGGTGGACCTTATCAACGTTCAAGATAAGTGCTGGAATGAACCCCTCATTGATAGCATTTTTTCCCCAGATGATCGGAGGAGTATTCTGAGCATCCCCCTTAGCGACAGACTCCTGAGAGATAAGAGGTACTGGTGGCCAACTAATGACGGCCAGTACTCTGTACGGTCTGGATATTGGCTGGGTAGGCTGGGCAAGAGAGGGACGGAGCAAACTTCGGAGTCTGATATTGCTTTCTGGAAGAAAATCTGGCATTTGGATGCACCACCAAAGTTAAAGCATTTTGTGTGGAGGGCCTGCACTGAGTGTCTAGCAGTGAAAGCAAATTTATCGCGAAGACATATTGTTGAGGATGGCCTATGTCAGATATGCGCAAATGAGATAGAGGCTACAAACCATGCTTTCTTTAATTGTGTGTTTTCCCAACATCTTTGGTCTTCTGATGATTTCCTTATGATGCTCCTGGAGGCACCCACTGAGTCTTTCTTCGAGCGGGCCAAATGGTGTTGTGGAAGATTAAAGGGTGAAGAGAACACTAAATTCTTGGCAGTAGTATGGGCTGCTTGGTTCTGTAGAAATACGAATATCTTTGAATCTATACGACCTAATGTGGGGATGATCAAAGAACGCTTTCTCAGTTTGGTGCGAGATTACATATTTTATCAGAACGCTACAAACAAGGCCCATAGCAGAGGGCCAAGTGTAGTGTCACTGGAGGACTGGCAACCTCCGGACGCAGGCTACGTCAAGGTCAATTGTGATGCAGCTATGCTTGATAATGGGGTGATTGGGATGGGGTGTGCGATAAGGGATGAATATGGAACTATTATGGCACTGGGCGTCAAAAGAATCACAGCACAATGGAATGTCAAGATGGCTGAGGTTGCTGCTCTTTTATTTGGTCTGAAGGTAGCGCAAAAAATGCGGATTCAAAACATCATGGCCGAGACTGACTCTCTAGGCACAGTCACCTGTATAATAAACCAGAAGATGGACCTCTCACCTTTGGGACAGATTGTTGGTGATATTTTAGCTCTTCGCATATTTTTTTCTAATTTTCATATCAATCATGTGAAAAGGGTGGGAAACATAGTGGCCCATATGATGTCAAGATTCCCACCCCCTGATGAGAAGGAGTTTGTCTTCTTTGAGAACTTTCCACAGGGCATATTAGCTCTAGCTGGACTTGATTTTGCTATTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_343993.p1 GENE.R_Transcript_343993~~R_Transcript_343993.p1 ORF type:complete len:944 (+),score=119.45,RVT_1|PF00078.23|5.7e-39,zf-RVT|PF13966.2|3.9e-18,RVT_3|PF13456.2|4.7e+02,RVT_3|PF13456.2|7.5e+03,RVT_3|PF13456.2|1.7e+03,RVT_3|PF13456.2|3.5e-14 R_Transcript_343993:1005-3836(+)
MNAILDAEPTHEEIFNALNQMHPKKAPGPDGMHALFFQKFWHIVGADLIAYVKSWWNGKEDLSSINTTNIVLIPKTKDPKRMIEFRPISLCNVLYKIISKTLANRLKKLLPLIVSENQSAFISGRSITDNALVAFEIFHSMKHKKGRKGTMALKLDMRKAYDRIEWVFLEKVMLKLGFGNAWVNRVMQWQQCLRSVSFACVINGQQRGRIRPTRGLRQGDPMSPYLFILCADAFSTLLEKAAMRKKIHGACVCRGAPAVSHLFFADDSILFSRATTQECAKIADIIALYERASGQKVNFDKTEVAFSANVRSTSRDAIRRLLNVREVERHEKYLGLPTAIGRSKKAVFAGLKERIWKKVQGWKEKLLSKPGKEVLIKSIVQAIPTYVMSIFRLPDGLCEEIQGLMAKFWWGSTEEKRKMHWKSWDKLCLPKSHGGLGFRDIKTFNQALLAKQAWRLTNGENSLLHRVLKARYYKNSDFVSSFLGSNPSYTWRSIWGSKSLLLEGLKWRVGNGVDINVFTEAWLPGDSSVVVPTSNNENMAQLRVVDLINVQDKCWNEPLIDSIFSPDDRRSILSIPLSDRLLRDKRYWWPTNDGQYSVRSGYWLGRLGKRGTEQTSESDIAFWKKIWHLDAPPKLKHFVWRACTECLAVKANLSRRHIVEDGLCQICANEIEATNHAFFNCVFSQHLWSSDDFLMMLLEAPTESFFERAKWCCGRLKGEENTKFLAVVWAAWFCRNTNIFESIRPNVGMIKERFLSLVRDYIFYQNATNKAHSRGPSVVSLEDWQPPDAGYVKVNCDAAMLDNGVIGMGCAIRDEYGTIMALGVKRITAQWNVKMAEVAALLFGLKVAQKMRIQNIMAETDSLGTVTCIINQKMDLSPLGQIVGDILALRIFFSNFHINHVKRVGNIVAHMMSRFPPPDEKEFVFFENFPQGILALAGLDFAI*

Click here to download the sequence:
Link to NCBI Protein BLAST