Transcript Information: R_Transcript_348628.p1


Annotated TAIR IDAT1G31920.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:11461864-11463684 | Reverse length=606
E-Value6.2E-241
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.93373232606647
Replicate 20.24253152296054
Replicate 30.56699845535031
Condition 2: 8 Hour
Replicate 10.36365145961255
Replicate 20.47968888438187
Replicate 30.41934413974491
Condition 3: 24 Hour
Replicate 10.30307336274197
Replicate 20.21836889990671
Replicate 30.2889465965267


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_348628.p1 GENE.R_Transcript_348628~~R_Transcript_348628.p1 ORF type:complete len:606 (+),score=100.92,PPR_2|PF13041.2|1.8e+02,PPR_2|PF13041.2|4.2e-08,PPR_2|PF13041.2|1.9,PPR_2|PF13041.2|0.46,PPR_2|PF13041.2|0.12,PPR_2|PF13041.2|6.3e-09,PPR_2|PF13041.2|1.1e+02,PPR_2|PF13041.2|0.18,PPR|PF01535.16|3.1e+03,PPR|PF01535.16|5.1e+03,PPR|PF01535.16|0.0014,PPR|PF01535.16|0.012,PPR|PF01535.16|2.4e-05,PPR|PF01535.16|9.1e+03,PPR|PF01535.16|0.0011,PPR|PF01535.16|2.8e-06,PPR|PF01535.16|1.3,PPR|PF01535.16|1.4,PPR|PF01535.16|1.4e+04,DYW_deaminase|PF14432.2|8.2e+02,DYW_deaminase|PF14432.2|5.6e-33,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|1.3e+04,PPR_3|PF13812.2|0.058,PPR_3|PF13812.2|0.0025,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|44,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|3e+02,PPR_3|PF13812.2|0.21,PPR_1|PF12854.3|2.1e+02,PPR_1|PF12854.3|2.7e+03,PPR_1|PF12854.3|0.64,PPR_1|PF12854.3|6e+02,PPR_1|PF12854.3|47,PPR_1|PF12854.3|0.0084,PPR_1|PF12854.3|4.4e+02,PPR_1|PF12854.3|0.073,PPR_1|PF12854.3|6.6e+02 R_Transcript_348628:144-1961(+)
ATGATTAGACTCCCAGTTCTTCACCAAACCCAGTTATTGTTTCCACAAAAAAATATCTCACAAATTTCAGACTTCAGTTTCAGGCTGAAAGAGCAAGAATGTGTATCCTTGTTGAAGAACTGCAAGGCCATGAAAGAATTGAAGCAAATTCATTCAAAAATGCTCAAGATGGGACTGTTTTGGAACTCATTTTGTGTAAGCAATCTCATAGCCACTTGTGCTCTCTCAAACTGGGGAAATATGGATTATGCATCTTTAGTGTTCAGCCAAATTGATGCTCCTTGTACATTTGATTTCAACAACATGATTAGAGGGCATGTTAAGGATGACAAATTTGAAAAAGCTTTTTGTCTCTTTGTTCAACTGCTTGAAAGTGGAAATTTGCCTGATAATTTCACATACCCATTTGTTCTGAAGGCTTGTGCTGTTTCATCTTTGCTAGAATTAGGGAGACAGATTCATGGGCATGTTTTTAAGAATGGGTTTCATGATGATGAGTTTGTGCAGAACAGTTTGATCAACTTGTATGGGAAGTGTGGGAGAATCAGAGACTCTTGTGCTGTTTTTGAGCAAATTGAGCAGAAAAGTGTTGCTTCTTGGAGTTCCCTAGTTACAGCTCATGCTAATTTAGGTATGTGGTGGGAATGTCTGAAGATTTTTGGAGAAATGATGGAAGAAGGCAACTGGAGGGCTGAAGAGACCATTTTGGTAAACCTACTTTCTGCTTGTACTCATCTGGGTGCCCTTGATTTAGGAAGGTCTATACATGGGTACTTAATGAGGAACTTGAGTGGCTTAAATGTGATAGTGGAAACTTCTTTGATAGACATGTACATAAAGTGTGGGTGTGTAGAAAAGGGACTTGCTCTTTTTAGTAGGATGAGCACGAAGAATCGAGTGTCTTACAGTGTGATGATTGCAGGCCTCGCCATGCATGGGCATGGCCACGAGGCACTAACACTCTTCTCGGAGATGCTTGGGCAAGGAATTGAGCCAGATGATGTCGTCTACTTGGGTGTGCTGAGTGCTTGCAGACATTCTGGCCTTGTTGAAGAGGGTCTGATATTGTTCGAGAAATTGAGGGTCGAGCATCAAATTCAACCGACAATCCAGCATTATGGTTGCATCTTGGACCTCCTAGGTCGAGCTGCTAAGTTTGATGAAGCATTCGATCTGGTTGAAAATATGGAAATGGCACCCAATGAAGTCGTGTGGCGAACTCTGCTGAGCGCAGCTAGAGTTCATCGAAACTTGGAAGTAGGAGAACGAGTAGCAAATGCACTGATGCAACTGGACTCGAACAATGCTGGGGACTACATCATGCTGTCAAATATGTATGCACAAGCTCAAAGATGGACAGATGCAGCTACTGCTCGGACTATGCTGGTACACAGAGCCTTGGATCAGGCTGCTGGAGTGAGTTTGGTTGAGGTGAAAAGAAAGGTGTACAGTTTCGTCTCACAGGATAAATCACACTTTAATTGGGTTGACATTTATGAAATGATCCACCAAATCGAGTGGCAACTAAAGTTTGAAGGGTATGTTCCAGATTTATCTGAAGTTGTACACAATGTAGATGCAGAAGAAAAGAGACAAAGCTTGAGATATCATAGTCAGAAGTTAGCGTTTGCTTTTGCACTTCAACATACATCTCAGGATACTGCAATCAGAATAGCTACCAATATCCGTATGTGTAGAGATTGTCACACTTACACCAAGTTCTTTTCAATTGTCTATAACCGCGTAATTGTTGTCAGGGATCGTAATCGATTCCACCATTTCAAAAATGGAACTTGCTCTTGCAGGGATTACTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_348628.p1 GENE.R_Transcript_348628~~R_Transcript_348628.p1 ORF type:complete len:606 (+),score=100.92,PPR_2|PF13041.2|1.8e+02,PPR_2|PF13041.2|4.2e-08,PPR_2|PF13041.2|1.9,PPR_2|PF13041.2|0.46,PPR_2|PF13041.2|0.12,PPR_2|PF13041.2|6.3e-09,PPR_2|PF13041.2|1.1e+02,PPR_2|PF13041.2|0.18,PPR|PF01535.16|3.1e+03,PPR|PF01535.16|5.1e+03,PPR|PF01535.16|0.0014,PPR|PF01535.16|0.012,PPR|PF01535.16|2.4e-05,PPR|PF01535.16|9.1e+03,PPR|PF01535.16|0.0011,PPR|PF01535.16|2.8e-06,PPR|PF01535.16|1.3,PPR|PF01535.16|1.4,PPR|PF01535.16|1.4e+04,DYW_deaminase|PF14432.2|8.2e+02,DYW_deaminase|PF14432.2|5.6e-33,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|1.3e+04,PPR_3|PF13812.2|0.058,PPR_3|PF13812.2|0.0025,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|44,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|3e+02,PPR_3|PF13812.2|0.21,PPR_1|PF12854.3|2.1e+02,PPR_1|PF12854.3|2.7e+03,PPR_1|PF12854.3|0.64,PPR_1|PF12854.3|6e+02,PPR_1|PF12854.3|47,PPR_1|PF12854.3|0.0084,PPR_1|PF12854.3|4.4e+02,PPR_1|PF12854.3|0.073,PPR_1|PF12854.3|6.6e+02 R_Transcript_348628:144-1961(+)
MIRLPVLHQTQLLFPQKNISQISDFSFRLKEQECVSLLKNCKAMKELKQIHSKMLKMGLFWNSFCVSNLIATCALSNWGNMDYASLVFSQIDAPCTFDFNNMIRGHVKDDKFEKAFCLFVQLLESGNLPDNFTYPFVLKACAVSSLLELGRQIHGHVFKNGFHDDEFVQNSLINLYGKCGRIRDSCAVFEQIEQKSVASWSSLVTAHANLGMWWECLKIFGEMMEEGNWRAEETILVNLLSACTHLGALDLGRSIHGYLMRNLSGLNVIVETSLIDMYIKCGCVEKGLALFSRMSTKNRVSYSVMIAGLAMHGHGHEALTLFSEMLGQGIEPDDVVYLGVLSACRHSGLVEEGLILFEKLRVEHQIQPTIQHYGCILDLLGRAAKFDEAFDLVENMEMAPNEVVWRTLLSAARVHRNLEVGERVANALMQLDSNNAGDYIMLSNMYAQAQRWTDAATARTMLVHRALDQAAGVSLVEVKRKVYSFVSQDKSHFNWVDIYEMIHQIEWQLKFEGYVPDLSEVVHNVDAEEKRQSLRYHSQKLAFAFALQHTSQDTAIRIATNIRMCRDCHTYTKFFSIVYNRVIVVRDRNRFHHFKNGTCSCRDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST