Transcript Information: R_Transcript_349309.p2


Annotated TAIR IDAT1G78570.1
Annotated Gene Namerhamnose biosynthesis 1
Annotated Gene Symbol(s)RHM1, ROL1, ATRHM1
Annotation TypeHomolog
Chromosome Positionchr1:29550110-29552207 | Forward length=669
E-Value1E-154
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.51344475259406
Replicate 20.35436793951558
Replicate 30.16108816874931
Condition 2: 8 Hour
Replicate 10.2410704003245
Replicate 20.53464837032371
Replicate 30.17870784014446
Condition 3: 24 Hour
Replicate 11.1947100807666
Replicate 20.21714038288895
Replicate 30.43098152688687


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_349309.p2 GENE.R_Transcript_349309~~R_Transcript_349309.p2 ORF type:complete len:711 (+),score=-100.54,GDP_Man_Dehyd|PF16363.1|6.8e-70,Epimerase|PF01370.17|4.3e-58,Epimerase|PF01370.17|0.72,3Beta_HSD|PF01073.15|5.4e-21,NAD_binding_4|PF07993.8|5e-17,NAD_binding_4|PF07993.8|1.5e+03,Polysacc_synt_2|PF02719.11|9.1e-16,RmlD_sub_bind|PF04321.13|2.9e-12,RmlD_sub_bind|PF04321.13|21 R_Transcript_349309:109-2241(+)
ATGTCGGCCACCCCGAAGGAAGCGCCGGTCATCTACACGCCCAAGGTGATCCTCCTCACCGGCGGCGCTGGATTCATCGGTTCGAACGTGCTGATCCACCTTGGTGCGAAGTATCCGGACTACAAGCTGATCTGCTTGGATAAGCTCGATGTCTGCTCCTCGTTGAACAACCTCGCGCCGTTGAAGAACAATCCGCAGTTCCAGTTCGTCCACGGTGATATCTGCTCGGCCGACCTCGTGCGCCACTTGATCCAGGCGAACGATGTTGACACGATCATGCACTTCGCGTCGCAGACGCACGTCGACAATTCGTTCGGTAACTCGCTCGCGTTCACAGAGTCGAACGTGCGGGGTACCCACACCCTCCTCGAGTCGGTCAAGTCGTGCGGCCAGCAGATTAAGCGCTTCATCCACGTGTCGACCGATGAGGTGTACGGTGAGCAGGAGGCGGAGGATGAGCGTTCGCGCGAGCACGAGACGCCGATTAACCCGACGAATCCGTACGCGGCGACCAAGGCTGCGGCCGAGTTCATCGTCAAGTCGTACCGCTCGTCGTTCCAGCTGCCGACGATCATCACGCGTGGTAACAACGTCTACGGTCCGCGTCAGTACCCGGAGAAGCTGATCCCGAAGTTCACCAACATCCTGTCGCGTGGTGGCTCGTGCCCGGTCCATGGTTCGGGCAAGAATCGTCGCTCGTTCCTCCACGTCGAGGATGTCGCGCGTGCGTTCGACGTCATCCTTCACAAGGGTACGACGGGCGAGATCTACAACATCGGCTCGGAGGAGGAGTACGAGAATATCGATATCCTCCAGCGTCTGATCAAGTTGTTCCGTACTGAGTACCCGCAGTGCCTCAACAAGGACCTCCCGGACTCGCACTACATCACCTACGTGCGTGATCGTGCGTTCAACGACTTCCGTTACCACATCGATTCGTCGTCGCTCTACGCACTCGGATGGAAGCGCGAGGAGAACAACCTCGATGAGGGTATCCGCAAGACGGTCGCCTGGTACATGGCGAATCCGAACCACTGGCCGAATATTGAGTCGGCCCTCGCGGCACACCCGTACCTCCTCCCGGAGGGTCTTGCCGCGTCGTCCAACTCGTCGACCGCGGCCAACAAGGCCATCGGTGCGGTGTTGCCGGCGGCGCCGCAGCTTCAGCTCCAGGCGTCGCATCCGGCGGCGTCGGCGTCGAATCCGCTCATGTCGCCGGGCGTGTCGAATGGTGCGAAGCCGTTGAAGTGGCTCATCTTCGGCCACAAGGGTTGGATCGGTGGCCAGGTGCTCGAGGCGCTCAAGACTGCGCGTCCGCAGGACTCGATCCTCCTCGCGTCGGCACGTGCCGATGACGAGGTCGGTGTCGAGCAGGAGCTTCTCACGCTCCGTCCGGATCGAGTACTGTCGCTCATCGGCCGCACGCATGGTCCGGGCTTCTCGACCATCGACTATCTCGAGCAGAAGGGCAAGCTGCGCGAGAACCTTCGTGACAACCTGTATGCGCCGCTCTGCCTCATGTACCTCAGCGCGAAGCATGGCATTCACTTCACGTACCTCGGCACGGGTTGCGTCTTCACGTACGATGATGAGCACAAGGTCGGTCAGGATCCGTCGAAGGGCTTCCACGAGAATTCCCTGCCGAACTTCTTCGGCTCGGCGTACTCGACGGTGAAGGGCTTCACGGATCGTCTCTTCCACCTGATGGGCGGCCAGGCGCTGAATGTGCGCATCCGTATGCCGATCACGGCGGACGACTCGCCGCGTAACTTCATCACGAAGATTACGACGTACAAGAAGATCTGCTCGATCTCGAACTCGATGACCGTCCTCCCGCAACTCCTGCCGATCATGCTCGAGATGGCGGCACAGAAGGAGGTCGGCACGGTCAACATGGTGAATCCGAATCCGATCTCGCATTCGGAGATTCTCACTAAGTACCGAGAGATCGTCGATCCGAACTTTAAGTGGGAGGAGTTCACTGTCGAGGAGCAGAACAAGATCCTCGCCGCCGAGCGTTCGAACAATACCCTCTCGACCGCGCGCCTTCAGCAGTTCGCGCCGCATGTCCTCCCGATCGACAAGGCTGTCGAACAGGTTCTCCGCGACATGGCTGCGCGTCGCAAGCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_349309.p2 GENE.R_Transcript_349309~~R_Transcript_349309.p2 ORF type:complete len:711 (+),score=-100.54,GDP_Man_Dehyd|PF16363.1|6.8e-70,Epimerase|PF01370.17|4.3e-58,Epimerase|PF01370.17|0.72,3Beta_HSD|PF01073.15|5.4e-21,NAD_binding_4|PF07993.8|5e-17,NAD_binding_4|PF07993.8|1.5e+03,Polysacc_synt_2|PF02719.11|9.1e-16,RmlD_sub_bind|PF04321.13|2.9e-12,RmlD_sub_bind|PF04321.13|21 R_Transcript_349309:109-2241(+)
MSATPKEAPVIYTPKVILLTGGAGFIGSNVLIHLGAKYPDYKLICLDKLDVCSSLNNLAPLKNNPQFQFVHGDICSADLVRHLIQANDVDTIMHFASQTHVDNSFGNSLAFTESNVRGTHTLLESVKSCGQQIKRFIHVSTDEVYGEQEAEDERSREHETPINPTNPYAATKAAAEFIVKSYRSSFQLPTIITRGNNVYGPRQYPEKLIPKFTNILSRGGSCPVHGSGKNRRSFLHVEDVARAFDVILHKGTTGEIYNIGSEEEYENIDILQRLIKLFRTEYPQCLNKDLPDSHYITYVRDRAFNDFRYHIDSSSLYALGWKREENNLDEGIRKTVAWYMANPNHWPNIESALAAHPYLLPEGLAASSNSSTAANKAIGAVLPAAPQLQLQASHPAASASNPLMSPGVSNGAKPLKWLIFGHKGWIGGQVLEALKTARPQDSILLASARADDEVGVEQELLTLRPDRVLSLIGRTHGPGFSTIDYLEQKGKLRENLRDNLYAPLCLMYLSAKHGIHFTYLGTGCVFTYDDEHKVGQDPSKGFHENSLPNFFGSAYSTVKGFTDRLFHLMGGQALNVRIRMPITADDSPRNFITKITTYKKICSISNSMTVLPQLLPIMLEMAAQKEVGTVNMVNPNPISHSEILTKYREIVDPNFKWEEFTVEEQNKILAAERSNNTLSTARLQQFAPHVLPIDKAVEQVLRDMAARRKQ*

Click here to download the sequence:
Link to NCBI Protein BLAST