Transcript Information: R_Transcript_350029.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.23938309448812
Replicate 20.068840329233764
Replicate 30.15020811538461
Condition 2: 8 Hour
Replicate 10.080281524417197
Replicate 20.14662873338482
Replicate 30.29756738721946
Condition 3: 24 Hour
Replicate 10.15054299821445
Replicate 20.43387394538841
Replicate 30.21528889855965


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_350029.p1 GENE.R_Transcript_350029~~R_Transcript_350029.p1 ORF type:5prime_partial len:305 (+),score=59.80,UBN2_3|PF14244.2|5.5e-25,Retrotrans_gag|PF03732.13|2.1e-09 R_Transcript_350029:1-915(+)
CCTCTTTTACCTCATTGGGAGAGATGCAATAATCTTGTGATTACTTGGATTCTACACTCTGTTGATTCTGAAATTGGAAGAAGTATATTGTATTATCACACTGCATCAGAAATTTGGAATGAACTTGTTGATCGATATGGACAGTCTAATGCACCTAGGAAGTATCAGGTTCATAAGCATATCAGTGAGATTGGGCAAGGAAGTAGCACTGTAACTGATTATTACACTGCTTTGAAAACATCCTGGGATGAGTATCTGTCCTTAATTACCCTGCCAGCTTGTACTTGTGGTGCTGGAAATGCATTCTTAGGAATTTTGCTTGAGCAGCAAGTACTTCAATTCCTTTTAGGACTTAATGATGATTACATACATACTCGAGGTAATCTGTTGATGATGCAACCATTACCAAATCTCAGTCAAGCATACAGATATGTTTTTCAAGAAGAAAAACAAAGACAGTGTGGTGCTTCTGTCTCTCTTGGTTCTGATTCCACAGCTCTTGCAGCACAGAAAGGACCTTATGTTGGAAATCAAAAATTTGGTAACAAATGGTCTAGGCATACCAATAATAGTCCAGGCAATGACTATCAGTCTTCTATTTCAATGCAATCATATCCTAACACTTTTTCCGGACCTTCACAACATGCTCAGAGGCCAGTGTATGGTATAAGTCCTAATGGAAGGAGATCTAAATATTTTTGTGATCATTGTAAGGTGTTTGGACACAGTATTGATAGATGCTACAAAGTCCATGGTTATCCTCCTGACAAAGGGAAGAAGATAGCCAATTATGCTCAGCATGATCCTGTGATTGATATTTCTGGTGGTTCTGTTTCTTCTCCTGCTGTTGATGGATCTTCTTCACATAATCTGACCTCTGATCAGATTCAACACCTCATTTCTCTGGTGTCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_350029.p1 GENE.R_Transcript_350029~~R_Transcript_350029.p1 ORF type:5prime_partial len:305 (+),score=59.80,UBN2_3|PF14244.2|5.5e-25,Retrotrans_gag|PF03732.13|2.1e-09 R_Transcript_350029:1-915(+)
PLLPHWERCNNLVITWILHSVDSEIGRSILYYHTASEIWNELVDRYGQSNAPRKYQVHKHISEIGQGSSTVTDYYTALKTSWDEYLSLITLPACTCGAGNAFLGILLEQQVLQFLLGLNDDYIHTRGNLLMMQPLPNLSQAYRYVFQEEKQRQCGASVSLGSDSTALAAQKGPYVGNQKFGNKWSRHTNNSPGNDYQSSISMQSYPNTFSGPSQHAQRPVYGISPNGRRSKYFCDHCKVFGHSIDRCYKVHGYPPDKGKKIANYAQHDPVIDISGGSVSSPAVDGSSSHNLTSDQIQHLISLVS*

Click here to download the sequence:
Link to NCBI Protein BLAST