Transcript Information: R_Transcript_354873.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.76585850159659
Replicate 20.14682727563845
Replicate 30.96112185718122
Condition 2: 8 Hour
Replicate 10.34245964961182
Replicate 20.46910940925564
Replicate 30.38080302000812
Condition 3: 24 Hour
Replicate 10
Replicate 20.30846515930877
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_354873.p1 GENE.R_Transcript_354873~~R_Transcript_354873.p1 ORF type:5prime_partial len:143 (+),score=24.99,UBN2_3|PF14244.2|5.1e-27 R_Transcript_354873:3-431(+)
GAGATAGCCTTAGCCACCAAAAGAAAGCTTGGGTTTGTTACTGGTATTGTTAACAGATCTAAGGATGATGATGTTAAACAAGAGGCCTGGGACACATGTAAAAACATAGTCATCTCCTGGATTTTGAACAACATTAATGACAATATCAGAAGGTCTGTTATGTACATGGACACATCTAGGAACATTTGGGTGAATATGGAAACTAGGTTCACAGTAAGCAATGGGTCTAGGAAGTATAAGCTCAACAGGGACACTTATGAAGTTAAGCAAAACAAAAGGCCCCTCTCTTACTATTATATTGAGTTGAGTGTTATTTGGGAAGAGCTTGAGTCCATGAATGACTACCTTCCTATTACAAAGTTGACTGCTGAAATACATGCTTATATTAAGGCTATTAAGCTTCAAAAGGAGGAACAAAGGCTCTTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_354873.p1 GENE.R_Transcript_354873~~R_Transcript_354873.p1 ORF type:5prime_partial len:143 (+),score=24.99,UBN2_3|PF14244.2|5.1e-27 R_Transcript_354873:3-431(+)
EIALATKRKLGFVTGIVNRSKDDDVKQEAWDTCKNIVISWILNNINDNIRRSVMYMDTSRNIWVNMETRFTVSNGSRKYKLNRDTYEVKQNKRPLSYYYIELSVIWEELESMNDYLPITKLTAEIHAYIKAIKLQKEEQRLF*

Click here to download the sequence:
Link to NCBI Protein BLAST