Transcript Information: R_Transcript_355143.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-15
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.92954893750882
Replicate 20.097205094519898
Replicate 30.53024855546649
Condition 2: 8 Hour
Replicate 10.79352340106813
Replicate 20.3105678033498
Replicate 30.75631710918279
Condition 3: 24 Hour
Replicate 10.42514457829082
Replicate 20.20421536009794
Replicate 30.60799179685826


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_355143.p1 GENE.R_Transcript_355143~~R_Transcript_355143.p1 ORF type:complete len:216 (+),score=39.60,UBN2_3|PF14244.2|1.9e-24,Retrotrans_gag|PF03732.13|3.2e-06 R_Transcript_355143:965-1612(+)
ATGCTATCAACTCAGAAGCTAAATGGTGATAGTTTTGGAGAATGGAAGAGGTCAGCAGAAATTTCTTCCAGTACTTGTACAAAACCAGCAGCTAATTCGCCAGTGTTAGGTCACTGGGAGAGGTGCAACAATCTGTTCTTCACTTGGATTTTGCATTCTCTTGAGCCAGAAATTGCTCGAAGTATTCTCTCTTACAGAACTGCTGCTGAAATCGGTTCCGAGCTTCAAGAAAGGTATTCTCAATCCAATGCTCCTGCCAAATATCATATTCACAAGCATATCAATTCTCTTTTTCAAGGAAATAACTCTGTGACTGAATACTATACTGGTCTGAAAATCTTTTGGGATGAATATTTGTCTTTGTTGAATTTGCCTGTATGCACATGTGGTGCTGGAAATGCCTTTCTAGGAATTTTACAAGAGCAACAAGTTCTACAGTTCCTGTTAGGTCTTAATGATGATTTTATGGCTGTGAGAGGGAATATTCTTATGCAACAACCACTTCCTCCTTTAAGCACAGCATATAGATATGTTGTACAGATAGAAAAACAGAGTGTGGCAATCCTATTTCTCTTGGTTATGAATCTACTGCACTTGTTGCTGTTCCATTTTCCTCATACCATGGAAATAAGCAGTCTCATGGTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_355143.p1 GENE.R_Transcript_355143~~R_Transcript_355143.p1 ORF type:complete len:216 (+),score=39.60,UBN2_3|PF14244.2|1.9e-24,Retrotrans_gag|PF03732.13|3.2e-06 R_Transcript_355143:965-1612(+)
MLSTQKLNGDSFGEWKRSAEISSSTCTKPAANSPVLGHWERCNNLFFTWILHSLEPEIARSILSYRTAAEIGSELQERYSQSNAPAKYHIHKHINSLFQGNNSVTEYYTGLKIFWDEYLSLLNLPVCTCGAGNAFLGILQEQQVLQFLLGLNDDFMAVRGNILMQQPLPPLSTAYRYVVQIEKQSVAILFLLVMNLLHLLLFHFPHTMEISSLMV*

Click here to download the sequence:
Link to NCBI Protein BLAST