Transcript Information: R_Transcript_35842.p1


Annotated TAIR IDAT5G62410.1
Annotated Gene Namestructural maintenance of chromosomes 2
Annotated Gene Symbol(s)SMC2, TTN3, ATCAP-E1, ATSMC4
Annotation TypeOrtholog
Chromosome Positionchr5:25056308-25062436 | Forward length=1175
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.29599396142787
Replicate 20.17024027364566
Replicate 30.49528081288978
Condition 2: 8 Hour
Replicate 10.56251311365293
Replicate 20.39282630261542
Replicate 30.66228849560871
Condition 3: 24 Hour
Replicate 10.7135534678881
Replicate 20.4172616546866
Replicate 30.62113756543898


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_35842.p1 GENE.R_Transcript_35842~~R_Transcript_35842.p1 ORF type:3prime_partial len:740 (+),score=211.53,SMC_N|PF02463.15|2e-32,SMC_hinge|PF06470.9|1.5e-16,AAA_23|PF13476.2|2.1e-13,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|9.6e+02,AAA_21|PF13304.2|5.9e-06 R_Transcript_35842:245-2461(+)
ATGCACATCAAAGAGATCTGCTTAGAAGGCTTCAAGTCCTACGCTACAAGGACCGTAGTCCCCGGTTTCGACCCGTTTTTCAATGCCATTACTGGCCTAAACGGGTCCGGCAAATCCAACATTTTAGATTCCATTTGCTTCGTTTTGGGTATTACCAACTTGCAGCAGGTTAGGGCTTCCAATCTTCAAGAACTGGTGTATAAGCAAGGCCAAGCTGGCATTACCAAAGCCACTGTTTCCATCATTTTCGATAATTCTGATCGTACTCGGAGCCCCCTTGGTTATGAAGATTTTCCTGAGATTACTGTTACTCGTCAGATTGTGGTTGGTGGAAGGAATAAGTATCTGATTAACGGACACCTTGCGCAACCTAACCGAGTTCAGAATCTCTTCCACTCTGTCCAGCTGAATGTGAATAACCCACATTTTCTCATAATGCAAGGTCGCATCACAAAAGTTTTAAACATGAAGCCTCCTGAAATATTGTCTATGCTTGAAGAGGCTGCTGGAACGAGAATGTATGAGACGAAGAAAGAAGGTGCATTAAAGACGCTTGAGAAGAAGCAGAGTAAGGTTGATGAGATTGATAAGCTTCTTGATCAGGAGATCCTGCCTGCTTTACAGAAGTTAAGGAAAGAACGAATGCAATACATGCAATGGGCTAATGGAAATGCTGAGCTTGATCGACTTAAAAGGTTCTGCATTGCTTATGAGTATGTTCAAGCTGAGAGGATCAAAGATAGTGCAGTTCGTGAGGTAGAGCAAGTGAAGGCTAAAATTGTTGAGCTTGACACTGATGCACATAAAATGAAGGTGGAACTTCAAGAAATGGATACCAGAGTATCTGAATTGACCGCTGAGAAGGAAGCAAGCATGGGTGGGGAAATTAAAACGTTGCAACAGAAAGTAGATGCTTTAGCTCATGATCTTGTGAAAGAGACATCTGTGCTGAAAAATAAAGAGGATACTTTCAGAAGTGAAAAAAAGAATGCCGATAAGATTGTAAGAAACATTGAAGAACTGAAGCAGTCAGTAGATGAGAGGGCTGCTGCTGTCAAGAAGGCTGAAGAGGGTGCAGCTGATATTACAAAGAGAACTCAGGAGCTCTCAAGGGATTTAGATGATTGTGAAAAAGAATATCAGGGTGTGCTGGCGGGAAAGAGCAGTCAGAATGAAGAGAAATGTCTTGAGGATCAGCTAGCTGATGCTAAAGCAGCAGTAGGGAATGCAGAAATAGAGCTAAAGCAACTCATAACACAAATAAACCATGGCGAGAAGGAGTTGAAAGAGAAAACTGCTCAGTTCATGTCAAGGCGTGACGAAGCCGCCGCTGTAGAAAATGAACTCAATACTAGGAAAAAGGAAGTTGACAGTGTTAAAAAGGCATTGGACTCCCTTCCGTATAAAGATGACCAGAATTGCCGCATGGAAGCTCTTAATAAGGAGCGTGCAGCTGAACTGGAGATCGTGCAGAAACTCAAAGATAAATTAAGGGTGCTTTCAGCACAGTTGGCAAATGTTCAGTTCACTTACCGGGATCCAACCAGGAACTTTGATAGATCAACAGTAAAAGGTGTTGTTGCAAAGCTCATCAAAGTAAAAGATGAATCCACAATGATTGCACTGGAGGTTGTGGCTGGTGGTAGGCTCTTCAATGTTGTTGTTGATACAGAAACTACTGGTAAACAGCTTCTGCAAAATGGCAATCTCCGCAGGAGAGTTACTATTATCCCTCTTAACAAAATTCAGGCACATGTTATCTCTCCTGACAAACAGCGAGCTGCTGCTAACATGGTTGGAAAGGAGAATGCAAAACTGGCACTTTCTTTGGTGGAATATGATGAGGAATTGAAGGTTGCCTTTAATAAAGAAGGAAACATTGACATTAGGGAGCCATGTGTCACTCTGGAGGGGGACATATTTCAGCCAAGTGGTCTCCTGACTGGTGGCAGTCGCAGGGGCGGGGGTGAATTGCTTGGACAACTTCGGGCTTTGGCAGAGGCTGAGTCAGAGCTTTCTACTCATCAGAAGAGACTATCTGAAATAGAAACTGAGATCGCTCAACTTCTTCCTCTTCAAAAAAAGTTTACTGAACTTAACAACCAGTTGAAGCTGAAGGAGTATGAGCTTGAATTATTCCAGGGCCGTGCTGAGCAAAATGAGCATCACAAGCTTGGAGAATCATTGAAGAAGATTGAGCAGGATCTTGGAGATGCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_35842.p1 GENE.R_Transcript_35842~~R_Transcript_35842.p1 ORF type:3prime_partial len:740 (+),score=211.53,SMC_N|PF02463.15|2e-32,SMC_hinge|PF06470.9|1.5e-16,AAA_23|PF13476.2|2.1e-13,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|9.6e+02,AAA_21|PF13304.2|5.9e-06 R_Transcript_35842:245-2461(+)
MHIKEICLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIIFDNSDRTRSPLGYEDFPEITVTRQIVVGGRNKYLINGHLAQPNRVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEGALKTLEKKQSKVDEIDKLLDQEILPALQKLRKERMQYMQWANGNAELDRLKRFCIAYEYVQAERIKDSAVREVEQVKAKIVELDTDAHKMKVELQEMDTRVSELTAEKEASMGGEIKTLQQKVDALAHDLVKETSVLKNKEDTFRSEKKNADKIVRNIEELKQSVDERAAAVKKAEEGAADITKRTQELSRDLDDCEKEYQGVLAGKSSQNEEKCLEDQLADAKAAVGNAEIELKQLITQINHGEKELKEKTAQFMSRRDEAAAVENELNTRKKEVDSVKKALDSLPYKDDQNCRMEALNKERAAELEIVQKLKDKLRVLSAQLANVQFTYRDPTRNFDRSTVKGVVAKLIKVKDESTMIALEVVAGGRLFNVVVDTETTGKQLLQNGNLRRRVTIIPLNKIQAHVISPDKQRAAANMVGKENAKLALSLVEYDEELKVAFNKEGNIDIREPCVTLEGDIFQPSGLLTGGSRRGGGELLGQLRALAEAESELSTHQKRLSEIETEIAQLLPLQKKFTELNNQLKLKEYELELFQGRAEQNEHHKLGESLKKIEQDLGDA

Click here to download the sequence:
Link to NCBI Protein BLAST