Transcript Information: R_Transcript_35843.p1


Annotated TAIR IDAT5G62410.1
Annotated Gene Namestructural maintenance of chromosomes 2
Annotated Gene Symbol(s)SMC2, TTN3, ATCAP-E1, ATSMC4
Annotation TypeOrtholog
Chromosome Positionchr5:25056308-25062436 | Forward length=1175
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.194153362358
Replicate 211.394441984162
Replicate 316.148959556375
Condition 2: 8 Hour
Replicate 113.288187063509
Replicate 213.949561114789
Replicate 318.136266908958
Condition 3: 24 Hour
Replicate 123.229497254067
Replicate 217.040157756541
Replicate 324.311448823823


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_35843.p1 GENE.R_Transcript_35843~~R_Transcript_35843.p1 ORF type:complete len:1183 (+),score=337.07,SMC_N|PF02463.15|6.4e-32,SMC_N|PF02463.15|3.4e-30,SMC_hinge|PF06470.9|2.4e-23,SMC_hinge|PF06470.9|4.4e+03,AAA_21|PF13304.2|1.2e-05,AAA_21|PF13304.2|4e+03,AAA_21|PF13304.2|6.5e-07 R_Transcript_35843:245-3793(+)
ATGCACATCAAAGAGATCTGCTTAGAAGGCTTCAAGTCCTACGCTACAAGGACCGTAGTCCCCGGTTTCGACCCGTTTTTCAATGCCATTACTGGCCTAAACGGGTCCGGCAAATCCAACATTTTAGATTCCATTTGCTTCGTTTTGGGTATTACCAACTTGCAGCAGGTTAGGGCTTCCAATCTTCAAGAACTGGTGTATAAGCAAGGCCAAGCTGGCATTACCAAAGCCACTGTTTCCATCATTTTCGATAATTCTGATCGTACTCGGAGCCCCCTTGGTTATGAAGATTTTCCTGAGATTACTGTTACTCGTCAGATTGTGGTTGGTGGAAGGAATAAGTATCTGATTAACGGACACCTTGCGCAACCTAACCGAGTTCAGAATCTCTTCCACTCTGTCCAGCTGAATGTGAATAACCCACATTTTCTCATAATGCAAGGTCGCATCACAAAAGTTTTAAACATGAAGCCTCCTGAAATATTGTCTATGCTTGAAGAGGCTGCTGGAACGAGAATGTATGAGACGAAGAAAGAAGGTGCATTAAAGACGCTTGAGAAGAAGCAGAGTAAGGTTGATGAGATTGATAAGCTTCTTGATCAGGAGATCCTGCCTGCTTTACAGAAGTTAAGGAAAGAACGAATGCAATACATGCAATGGGCTAATGGAAATGCTGAGCTTGATCGACTTAAAAGGTTCTGCATTGCTTATGAGTATGTTCAAGCTGAGAGGATCAAAGATAGTGCAGTTCGTGAGGTAGAGCAAGTGAAGGCTAAAATTGTTGAGCTTGACACTGATGCACATAAAATGAAGGTGGAACTTCAAGAAATGGATACCAGAGTATCTGAATTGACCGCTGAGAAGGAAGCAAGCATGGGTGGGGAAATTAAAACGTTGCAACAGAAAGTAGATGCTTTAGCTCATGATCTTGTGAAAGAGACATCTGTGCTGAAAAATAAAGAGGATACTTTCAGAAGTGAAAAAAAGAATGCCGATAAGATTGTAAGAAACATTGAAGAACTGAAGCAGTCAGTAGATGAGAGGGCTGCTGCTGTCAAGAAGGCTGAAGAGGGTGCAGCTGATATTACAAAGAGAACTCAGGAGCTCTCAAGGGATTTAGATGATTGTGAAAAAGAATATCAGGGTGTGCTGGCGGGAAAGAGCAGTCAGAATGAAGAGAAATGTCTTGAGGATCAGCTAGCTGATGCTAAAGCAGCAGTAGGGAATGCAGAAATAGAGCTAAAGCAACTCATAACACAAATAAACCATGGCGAGAAGGAGTTGAAAGAGAAAACTGCTCAGTTCATGTCAAGGCGTGACGAAGCCGCCGCTGTAGAAAATGAACTCAATACTAGGAAAAAGGAAGTTGACAGTGTTAAAAAGGCATTGGACTCCCTTCCGTATAAAGATGACCAGAATTGCCGCATGGAAGCTCTTAATAAGGAGCGTGCAGCTGAACTGGAGATCGTGCAGAAACTCAAAGATAAATTAAGGGTGCTTTCAGCACAGTTGGCAAATGTTCAGTTCACTTACCGGGATCCAACCAGGAACTTTGATAGATCAACAGTAAAAGGTGTTGTTGCAAAGCTCATCAAAGTAAAAGATGAATCCACAATGATTGCACTGGAGGTTGTGGCTGGTGGTAGGCTCTTCAATGTTGTTGTTGATACAGAAACTACTGGTAAACAGCTTCTGCAAAATGGCAATCTCCGCAGGAGAGTTACTATTATCCCTCTTAACAAAATTCAGGCACATGTTATCTCTCCTGACAAACAGCGAGCTGCTGCTAACATGGTTGGAAAGGAGAATGCAAAACTGGCACTTTCTTTGGTGGAATATGATGAGGAATTGAAGAGTGCTATGGAGTACGTTTTTGGTTCCACCTTTGTTTGCAAGACAAGGGAAGCCGCTGTTAAGGTTGCCTTTAATAAAGAAGGAAACATTGACATTAGGGAGCCATGTGTCACTCTGGAGGGGGACATATTTCAGCCAAGTGGTCTCCTGACTGGTGGCAGTCGCAGGGGCGGGGGTGAATTGCTTGGACAACTTCGGGCTTTGGCAGAGGCTGAGTCAGAGCTTTCTACTCATCAGAAGAGACTATCTGAAATAGAAACTGAGATCGCTCAACTTCTTCCTCTTCAAAAAAAGTTTACTGAACTTAACAACCAGTTGAAGCTGAAGGAGTATGAGCTTGAATTATTCCAGGGCCGTGCTGAGCAAAATGAGCATCACAAGCTTGGAGAATCATTGAAGAAGATTGAGCAGGATCTTGGAGATGCAAGTTCTACTTTAAAGGAGAAGCAATCAGTTTATGACAACTGTGTTAAGAGGGTCTCATCTCTTGAGAAATCAATCAAAGAATATGATAATAGTAGGGGTGCCCGGCTCAAAGATTTAGAAAAAAGGATCAAGGGGTTAAAGGCTGAAATGCAGTCAGCATCTAAGGACCTCAAGGGGCATGAAAATCGAAGAGAAAAGCTTATTATGGAAATGGAGGCTGTCGTTGAAGAACGTGCCTCCTTAGAGAGCCAACTTGATTCTTTGCAGACTCAAATTCAAAGTTTGGTCACTGAAGTTGATGAACAGAAAATCAAGGTGGCTTCCATAAAGGAGAACCACGATCATGCTCAGTCAGAGCTTAATGCTGCTCGTTCAAAGATGAAGGAATGTGACTCAGAAATCAGTCGTATTTTAAAAGAGCAGCAAAAACTCCAAAACAAAATAAGTGAAGCAAGCCTTGAAAGGAAGAAGATGGAAAATGAGGTCAGGAGGATGGAGGAGGAACAGAAAGACTGTTCTTTGAAGGTTGACAGGTTGATAGAGAAGCATCCCTGGATAGCATCTGAAAAGCAGCTCTTTGGAAGAAGTGGAAGTGACTACGATTTTGAATCTCGTGATCCTCGCAGGGCAAGAGAGGAACTGGAGAGACTACAGGCAGAGCAATCAAGCCTAGAGAAGCGAGTTAACAAAAAGGTCATGGCGATGTTTGAGAAAGCTGAAGATGAGTACAATGAGTTGATAAATAAGAAGAACATTATCGAGAATGATAAAGCAAAGATCAAGCAAGTTATTGAAGAGCTTGACGAGAAAAAGAAGGAGACCCTGAAAGTCACATGGGTGAAAGTTAGCAATGACTTTGGGTCCATCTTTTCGACATTATTGCCCGGAACAACTGCAAAGTTGGATCCTCCTGAAGGTTGTAGCTTTTTGGATGGACTTGAGGTTCGTGTTGCATTTGGAGGAGTTTGGAAACAATCGTTGTCAGAACTAAGTGGAGGACAGAGATCTTTGCTGGCACTGTCTTTGATATTGGCGTTACTTCTATTCAAACCTGCTCCCCTCTATATACTTGATGAGGTTGATGCTGCTCTTGATTTGAGCCACACACAAAATATTGGAAGAATGATCAAAACACACTTTCCTCATTCACAGTTCATTGTTGTTTCTCTCAAAGAAGGGATGTTCAACAACGCAAATGTCATATTCCGCACCAAGTTTGTTGATGGTGTTTCTACCGTTCAGAGAACTGTCACAGCAAAACAGAAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_35843.p1 GENE.R_Transcript_35843~~R_Transcript_35843.p1 ORF type:complete len:1183 (+),score=337.07,SMC_N|PF02463.15|6.4e-32,SMC_N|PF02463.15|3.4e-30,SMC_hinge|PF06470.9|2.4e-23,SMC_hinge|PF06470.9|4.4e+03,AAA_21|PF13304.2|1.2e-05,AAA_21|PF13304.2|4e+03,AAA_21|PF13304.2|6.5e-07 R_Transcript_35843:245-3793(+)
MHIKEICLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIIFDNSDRTRSPLGYEDFPEITVTRQIVVGGRNKYLINGHLAQPNRVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEGALKTLEKKQSKVDEIDKLLDQEILPALQKLRKERMQYMQWANGNAELDRLKRFCIAYEYVQAERIKDSAVREVEQVKAKIVELDTDAHKMKVELQEMDTRVSELTAEKEASMGGEIKTLQQKVDALAHDLVKETSVLKNKEDTFRSEKKNADKIVRNIEELKQSVDERAAAVKKAEEGAADITKRTQELSRDLDDCEKEYQGVLAGKSSQNEEKCLEDQLADAKAAVGNAEIELKQLITQINHGEKELKEKTAQFMSRRDEAAAVENELNTRKKEVDSVKKALDSLPYKDDQNCRMEALNKERAAELEIVQKLKDKLRVLSAQLANVQFTYRDPTRNFDRSTVKGVVAKLIKVKDESTMIALEVVAGGRLFNVVVDTETTGKQLLQNGNLRRRVTIIPLNKIQAHVISPDKQRAAANMVGKENAKLALSLVEYDEELKSAMEYVFGSTFVCKTREAAVKVAFNKEGNIDIREPCVTLEGDIFQPSGLLTGGSRRGGGELLGQLRALAEAESELSTHQKRLSEIETEIAQLLPLQKKFTELNNQLKLKEYELELFQGRAEQNEHHKLGESLKKIEQDLGDASSTLKEKQSVYDNCVKRVSSLEKSIKEYDNSRGARLKDLEKRIKGLKAEMQSASKDLKGHENRREKLIMEMEAVVEERASLESQLDSLQTQIQSLVTEVDEQKIKVASIKENHDHAQSELNAARSKMKECDSEISRILKEQQKLQNKISEASLERKKMENEVRRMEEEQKDCSLKVDRLIEKHPWIASEKQLFGRSGSDYDFESRDPRRAREELERLQAEQSSLEKRVNKKVMAMFEKAEDEYNELINKKNIIENDKAKIKQVIEELDEKKKETLKVTWVKVSNDFGSIFSTLLPGTTAKLDPPEGCSFLDGLEVRVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVIFRTKFVDGVSTVQRTVTAKQK*

Click here to download the sequence:
Link to NCBI Protein BLAST