Transcript Information: R_Transcript_359.p1


Annotated TAIR IDAT3G10650.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:3325562-3330819 | Reverse length=1309
E-Value4E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.495481792759
Replicate 29.262197772296
Replicate 38.8377767746858
Condition 2: 8 Hour
Replicate 112.538152121923
Replicate 212.782177846805
Replicate 312.899229674913
Condition 3: 24 Hour
Replicate 112.765192103915
Replicate 29.5416368250015
Replicate 311.704488889305


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_359.p1 GENE.R_Transcript_359~~R_Transcript_359.p1 ORF type:5prime_partial len:705 (+),score=192.62 R_Transcript_359:3-2117(+)
AAAAAGCGAGCATTTCAAATAAGTGCTCATGAGGATTTTCTTGAGCTGGATGATGATTTACATGTTAATGGGGTTGTTTCAACTCCTTCGAGTGAAGGGGCACAAGGCACTGATGTGCCTAAACTATCAGCTGGCATGCCTAATGGCCCTCCGCAGAGTGAAGCAATTGGAGTAGGGAAGCCATCAGTTCCAGAGCAAAAACCTTCAGGAGCTTCTTTGTTGACCAAGAAGGTATCGGAGCCTCTGTCAGATCTGTCTGCGCCAGCTGGTAAGGCTGCTGCTTTTACCTTCCCTGTTATGCCATCATCTTCTCCTGCAACTAGCCTGGCTTTGCAAGCAGCAGTCTCCACTCCTCTGTCAACTTTGCAGTCTGATAAAGCTGTACCATTGAATGAATCAAACAATGGCTTTCCTGTGTTTGGCACCAAATCTGACAAATTCCCTCCACTTACATTTTCTAGTACACGTGCTGTTGAATCTGCCATACAAAAGGACACTAAGCTGGAGTTTGCAAGCAGTGCAAATGATACAGCTGCAGCTAAAGCAAATGGACCTGCTGAAAATAATAAGAAGAGCACTCAGGAGCTTGTGAATGTATTTAAGAAACCAGAAGATGCTCCTACTCCTGTCGCTAGCACAGCTAAAGGCATATTCAACTTTGGATTGCCTGCCAATAATGCCATTCCTACTATCGGATCATTGAGTGCAGTTTGTACGACTGCCGGATCATCCCCAGTTTTGTTTTCGAGTACCTCAAGCAATCAGAGTTCACTTCTGGTCACTTCTTCAGTGCCATCTTTTCCATTCTCGGATAATTCCAGTTTATCTAATGGCTTTGCATCATCTACCCCATCCTCTACTAATGCTGTATCCATGGGGGGCACTGGTATTGAGAGCAGCACGTCCCCTTTTTCTGTTAGCAGTAGCGTACAGTTCGGCTCAATGACAGCACCATCAGTTTCACCTGGACCTTCTTTTCTGTTTGGATCTTCTTCAGTACCATCGACTACAGGTGCTTCTGCTTCAAAATCTACAGAGAGTTCAGCAGCCAAGTTAAAAGAGACTGCTTTTGGCAGCACAACTAGCAGTCTTTTTGGCACCAAATCTTCTGTAACTGTCAATGGAGGAAATGATGTTTCTGGTTTGAATGCTTCTACCTTAAAATCTGCCCGTGGTGAGGCTCCAATAGCTGCTCCTGCTGCTAGCAATGGATCTATCTTCGGTTTTCAAGCATCATCATCTAGTGCTCCAGTCTCAACCTCAACTCAGAGTTTCCCTAGTCCATTTCCTTCGCAAGCATCATCTCCTATTTTCGGGTTGGGTACAACCACTGCCACTAACACTTTTAGCTCAAGCACTGCTTCAGCAACAACTTTGGGTGCCTCTTCGAGTTCATCTTTCAGCTCGAGCAGTGGTAGTGCCTCCAGCATATTTGGCTCCAGTTGGCAGCCTTCAAAACCCACCAACACGAGTACCACATTTGGCTCGACGCCAGCATCAACTGGATTTTCGTTTGGAGCGACAGTCTCTGGGCCTTCAGTAGATAATAATAAGGCTCCTTCCGTTGTGTTTGGATCATCGACCCCAAGCTCTTCAGCAGCTGGTAACAGTGCAGGATTTGTGTTTGGAGCTGCCAGCTCATCAGCAGCTCCCATTTTCTCATTCTCCTCAGCTTCTTCAACTGCTCCTCCCTCTTCATCTCAGCCTGCATTTGGTAACACTAGCACTCCAGCATTTGCGTTTGGTTCATCTCCCTCGGGAAATAATGATCAGATGAGCATGGAAGATAGCATGGCAGAGGATTCTGTTCAGGCTTCGACACCTGCAGCTCCAGTGTTTGGTCAATCACCAATTTCAGCACCTTCACCGGGTTTTATGTTTGGTGCAACGCCTTCACCTGGTATTGGCAGTACAACAGCTCCACCAACAGCAAACTCATTTCAGTTTGGCAGCCAGCCTTCTCCAATGGCTCCTCAGAGCCCATCTCCATTTCAGCCTTCTGGTAGCGTGGACTTTAATGCCAGTGGGGCTGGGAGCTTTTCTTTGGGGACTGGTGGTGGTGACAAATCAAATCGTAAAATAGTGAAGGTGAAAGGCAGATTACGGAGAAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_359.p1 GENE.R_Transcript_359~~R_Transcript_359.p1 ORF type:5prime_partial len:705 (+),score=192.62 R_Transcript_359:3-2117(+)
KKRAFQISAHEDFLELDDDLHVNGVVSTPSSEGAQGTDVPKLSAGMPNGPPQSEAIGVGKPSVPEQKPSGASLLTKKVSEPLSDLSAPAGKAAAFTFPVMPSSSPATSLALQAAVSTPLSTLQSDKAVPLNESNNGFPVFGTKSDKFPPLTFSSTRAVESAIQKDTKLEFASSANDTAAAKANGPAENNKKSTQELVNVFKKPEDAPTPVASTAKGIFNFGLPANNAIPTIGSLSAVCTTAGSSPVLFSSTSSNQSSLLVTSSVPSFPFSDNSSLSNGFASSTPSSTNAVSMGGTGIESSTSPFSVSSSVQFGSMTAPSVSPGPSFLFGSSSVPSTTGASASKSTESSAAKLKETAFGSTTSSLFGTKSSVTVNGGNDVSGLNASTLKSARGEAPIAAPAASNGSIFGFQASSSSAPVSTSTQSFPSPFPSQASSPIFGLGTTTATNTFSSSTASATTLGASSSSSFSSSSGSASSIFGSSWQPSKPTNTSTTFGSTPASTGFSFGATVSGPSVDNNKAPSVVFGSSTPSSSAAGNSAGFVFGAASSSAAPIFSFSSASSTAPPSSSQPAFGNTSTPAFAFGSSPSGNNDQMSMEDSMAEDSVQASTPAAPVFGQSPISAPSPGFMFGATPSPGIGSTTAPPTANSFQFGSQPSPMAPQSPSPFQPSGSVDFNASGAGSFSLGTGGGDKSNRKIVKVKGRLRRK*

Click here to download the sequence:
Link to NCBI Protein BLAST