Transcript Information: R_Transcript_35979.p1


Annotated TAIR IDAT1G73240.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup (InterPro:IPR019049); Has 36 Blast hits to 36 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:27542397-27544668 | Reverse length=519
E-Value3.1E-153
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.113949678998
Replicate 216.361268060247
Replicate 319.535557346153
Condition 2: 8 Hour
Replicate 114.737718713531
Replicate 215.736997975023
Replicate 316.404946202199
Condition 3: 24 Hour
Replicate 121.701625322792
Replicate 220.682006921919
Replicate 320.69007556252


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_35979.p1 GENE.R_Transcript_35979~~R_Transcript_35979.p1 ORF type:complete len:530 (+),score=93.41,Ndc1_Nup|PF09531.6|0.00012,Ndc1_Nup|PF09531.6|7.1e-11 R_Transcript_35979:118-1707(+)
ATGTCGCCACCATCAGAAATCACCAACAACCGCTTCCTAGGTTTCCTCATATGGCAATCAATTCAAAGCACCACCATTTTCATCCTTTCCAAATCTATTATTCTCTCTCCTTTTGCCTACAAACCCTTTCTTCCCTCTTTATTCGGTTTCCTTAACCTCCTCTTCTTCCTTCTCTCTATGCTCCTTTTTTCCTTCTCCCTCCAAACTGTTGCCTCTCCCCAGCATCGCCGCCCTTCTTCTCCCTCCCAACTCGCTATCGGCTTGCTCCGATTCATCTTCACCTCTTCAACCCCATCCCCCCGAATCTGGGTTTCTCTAACCATGCTTCTTCTCATAATCGTCTCTGTTTTTTCGGGTTTTCTGGCGGTTGTTTCGGTTGTTGGCACTAGCTACTCAGCGTCCTTTGGTGTGTTGATTAATAACTTGGGGCTTAGGGCTGTTGCTGTTGGTTTGCTTTATGGTTTGTATTGTGTGTTCTATCAACGATGGGTCTTGGCTTTCCCTATTGTTCAGCGTCCCCCTTTTTATAGCTATAAGATGGGGATTCTTTCAGCTGTCAGACAAGCTATCAAGCTCTCAGTGGTGGCATTCTTGTTCTCGGTCATTTTCGTTGTCCTTTTACCTAATCAGTTTAAAGGTGAAGTTGCAGAGGAATATTTTGCTGAGCATTTCATGTTTTGGTTAGCGAGTTCCACAGTATTCCTATCTTGGGAGCTGATACTTCATTTGCACAAGGTTTTGCATACAAAGAGATTTTTGTTTGCTCCGCCAAAAGGATCTGCTGCTATTGAAACAAATCCTAGTGAACCTCTTTTGGCCGCTTTAGAGGATAGCTCTCCTAGGTCTCTTCTTCAATATCTTGCATATCTTGATTTATGCATGGTATGTGGAAGTAATGTTGATTCCTGGCGCCGAGCTGCCTTCTTTGAAGAAACTGGTGAAACTTACAAAAGAGTGGTTGGTGCATGCTTGAGACCTTTGGAGCAACTTGCATCAAAGCTGGCTGAAGGGTTAACAACTTCATCTGATAAAACACAGAAGCTGTCCCATCAACTATGCTCACCAGAGGACATTCGTCAAAGTCCTGAAATTCTGGAATTATTCAATGATTTTCAGTTGTATGCATGGTGTGCACAAGCTGTTGCATCACTAGAAGTACACTCGCACAAGGAAGACAGATTTGGAGTTGCTCAGCTTTCTGGGAGTCATGCTACTGTGGTATCAACATTACTATCTTGTCTTCTTGCCGTTGAAATATACATAGGAAAGAAGATCAACTTGCAGTCTCCAAATCATATGCTTGGTCCTGCTGGCATAAAATGGGCTACAAACAGCACAGCAAGGAGAGAGATTGTGACAGCCATGAACAAAAGAAGAGGTAGCTCTTCACACTCAAAGTCCTATGCATTAGCAGATGTTTTGAAGACATCTATTTACTCCATTGTATCTGAATTCCATGAGGAGATGCTGGCTAGCCTTAAAATGGGGCTTTTGGAGAAAGATTGGGTGAACAATGCCAAACCTTTGTATGGTTCTGTCGAACTTTTAGGCCAAAAATTGCACTTTTTTTTGAATTTTCAAGCTAGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_35979.p1 GENE.R_Transcript_35979~~R_Transcript_35979.p1 ORF type:complete len:530 (+),score=93.41,Ndc1_Nup|PF09531.6|0.00012,Ndc1_Nup|PF09531.6|7.1e-11 R_Transcript_35979:118-1707(+)
MSPPSEITNNRFLGFLIWQSIQSTTIFILSKSIILSPFAYKPFLPSLFGFLNLLFFLLSMLLFSFSLQTVASPQHRRPSSPSQLAIGLLRFIFTSSTPSPRIWVSLTMLLLIIVSVFSGFLAVVSVVGTSYSASFGVLINNLGLRAVAVGLLYGLYCVFYQRWVLAFPIVQRPPFYSYKMGILSAVRQAIKLSVVAFLFSVIFVVLLPNQFKGEVAEEYFAEHFMFWLASSTVFLSWELILHLHKVLHTKRFLFAPPKGSAAIETNPSEPLLAALEDSSPRSLLQYLAYLDLCMVCGSNVDSWRRAAFFEETGETYKRVVGACLRPLEQLASKLAEGLTTSSDKTQKLSHQLCSPEDIRQSPEILELFNDFQLYAWCAQAVASLEVHSHKEDRFGVAQLSGSHATVVSTLLSCLLAVEIYIGKKINLQSPNHMLGPAGIKWATNSTARREIVTAMNKRRGSSSHSKSYALADVLKTSIYSIVSEFHEEMLASLKMGLLEKDWVNNAKPLYGSVELLGQKLHFFLNFQAS*

Click here to download the sequence:
Link to NCBI Protein BLAST