Transcript Information: R_Transcript_35980.p1


Annotated TAIR IDAT1G73240.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup (InterPro:IPR019049); Has 36 Blast hits to 36 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:27542397-27544668 | Reverse length=519
E-Value2E-56
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.7729584096346
Replicate 21.7008176314878
Replicate 33.1992650273956
Condition 2: 8 Hour
Replicate 11.7783030408614
Replicate 22.248580296879
Replicate 34.056225836958
Condition 3: 24 Hour
Replicate 14.0400610484507
Replicate 23.3883777625189
Replicate 33.7906080742671


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_35980.p1 GENE.R_Transcript_35980~~R_Transcript_35980.p1 ORF type:3prime_partial len:358 (+),score=55.58 R_Transcript_35980:118-1188(+)
ATGTCGCCACCATCAGAAATCACCAACAACCGCTTCCTAGGTTTCCTCATATGGCAATCAATTCAAAGCACCACCATTTTCATCCTTTCCAAATCTATTATTCTCTCTCCTTTTGCCTACAAACCCTTTCTTCCCTCTTTATTCGGTTTCCTTAACCTCCTCTTCTTCCTTCTCTCTATGCTCCTTTTTTCCTTCTCCCTCCAAACTGTTGCCTCTCCCCAGCATCGCCGCCCTTCTTCTCCCTCCCAACTCGCTATCGGCTTGCTCCGATTCATCTTCACCTCTTCATCCCCACCTCCCCAAATCTGGGTTTCTCTGACCATGCTTCTTCTCATAATCATCTCGGTTTTTTCGGGTTTTCTGGCGGTTGTTTCGGTTGTTGGCACTAGCTACTCAGCGTCCTTTGGTGTGTTGATTAATAACTTGGGGCTTAGGGCTGTTGCTGTTGGTTTGCTTTATGGTTTGTATTGTGTGTTCTATCAACGATGGGTCTTGGCTTTCCCTATTGTTCAGTCAGGTGAGGAGGAGGTTGGATGGATGGAAGAAGGTCTATTACTCAGGCAGGATTACACTGTTACAATCTTGTCTTTTCAGCGTCCCCCTTTTTATAGCTATAAGATGGGGATTCTTTCAGCTGTCAGACAAGCTATCAAGCTCTCAGTGGTGGCATTCTTGTTCTCGGTCATTTTCGTTGTCCTTTTACCTAATCAGTTTAAAGGTGAAGTTGCAGAGGAATATTTTGCTGAGCATTTCATGTTTTGGTTAGCGAGTTCCACAGTATTCCTATCTTGGGAGCTGATACTTCATTTGCACAAGGTTTTGCATACAAAGAGATTTTTGTTTGCTCCGTCGAAAGGATCTTCTGCTATTGAAACAAATCCTAGTGAACCTCTTTTGGCCGCTTTAGAGGATAGCTCTCCTAGGTCTCTTCTTCAATATCTTGCATATCTTGATTTATGCATGGTATGTGGAAGTAATGTTGATTCCTGGCGCCGAGCTGCCTTCTTTGAAGAAACTGGTGAAACTTACAAAAGAGTGGTTGGTGCATGCTTGAGACCTTTGGAGCAACTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_35980.p1 GENE.R_Transcript_35980~~R_Transcript_35980.p1 ORF type:3prime_partial len:358 (+),score=55.58 R_Transcript_35980:118-1188(+)
MSPPSEITNNRFLGFLIWQSIQSTTIFILSKSIILSPFAYKPFLPSLFGFLNLLFFLLSMLLFSFSLQTVASPQHRRPSSPSQLAIGLLRFIFTSSSPPPQIWVSLTMLLLIIISVFSGFLAVVSVVGTSYSASFGVLINNLGLRAVAVGLLYGLYCVFYQRWVLAFPIVQSGEEEVGWMEEGLLLRQDYTVTILSFQRPPFYSYKMGILSAVRQAIKLSVVAFLFSVIFVVLLPNQFKGEVAEEYFAEHFMFWLASSTVFLSWELILHLHKVLHTKRFLFAPSKGSSAIETNPSEPLLAALEDSSPRSLLQYLAYLDLCMVCGSNVDSWRRAAFFEETGETYKRVVGACLRPLEQL

Click here to download the sequence:
Link to NCBI Protein BLAST