Transcript Information: R_Transcript_360004.p1


Annotated TAIR IDAT5G42310.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16915860-16918238 | Forward length=709
E-Value2.4E-174
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.5587533936873
Replicate 21.9147569562033
Replicate 31.9449116826922
Condition 2: 8 Hour
Replicate 13.0799830122321
Replicate 23.1642757322432
Replicate 33.9385570214047
Condition 3: 24 Hour
Replicate 13.2487463058072
Replicate 23.7452326417961
Replicate 33.1661459609977


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_360004.p1 GENE.R_Transcript_360004~~R_Transcript_360004.p1 ORF type:internal len:318 (-),score=68.98,PPR_2|PF13041.2|2.7e+03,PPR_2|PF13041.2|2.4e-06,PPR_2|PF13041.2|2.3e-05,PPR_2|PF13041.2|3.7e-09,PPR_2|PF13041.2|5.2e-09,PPR_2|PF13041.2|2.1e-17,PPR_2|PF13041.2|3.9e-12,PPR_2|PF13041.2|1.8e-07,PPR_2|PF13041.2|2.7e-08,PPR_2|PF13041.2|0.018,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|12,PPR|PF01535.16|5.8e-06,PPR|PF01535.16|0.013,PPR|PF01535.16|4e-06,PPR|PF01535.16|6.1e-13,PPR|PF01535.16|1.6e-06,PPR|PF01535.16|6e-06,PPR|PF01535.16|4.8e-06,PPR|PF01535.16|0.072,PPR_1|PF12854.3|2.9e+03,PPR_1|PF12854.3|34,PPR_1|PF12854.3|8.9e-07,PPR_1|PF12854.3|0.2,PPR_1|PF12854.3|0.0001,PPR_1|PF12854.3|6e-15,PPR_1|PF12854.3|0.0001,PPR_1|PF12854.3|2.5e-09,PPR_1|PF12854.3|0.00061,PPR_1|PF12854.3|0.23,PPR_3|PF13812.2|43,PPR_3|PF13812.2|38,PPR_3|PF13812.2|4.2e-07,PPR_3|PF13812.2|0.0027,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|3.6e-09,PPR_3|PF13812.2|0.037,PPR_3|PF13812.2|5.3e-05,PPR_3|PF13812.2|1.2e-05,PPR_3|PF13812.2|0.3,ECSIT|PF06239.7|20,ECSIT|PF06239.7|0.0026,ECSIT|PF06239.7|22,ECSIT|PF06239.7|4.3,ECSIT|PF06239.7|6.9e+02,TPR_12|PF13424.2|12,TPR_12|PF13424.2|0.084,TPR_12|PF13424.2|5.4,TPR_12|PF13424.2|59,TPR_14|PF13428.2|1.4,TPR_14|PF13428.2|2e+02,TPR_14|PF13428.2|1.1e+02,TPR_14|PF13428.2|24,TPR_14|PF13428.2|4.2,TPR_7|PF13176.2|4.2e+02,TPR_7|PF13176.2|3.9e+02,TPR_7|PF13176.2|0.12,TPR_7|PF13176.2|0.13,TPR_7|PF13176.2|1.2e+02,TPR_19|PF14559.2|2.8,TPR_19|PF14559.2|1.4,TPR_19|PF14559.2|12,TPR_19|PF14559.2|7.1e+02,TPR_8|PF13181.2|51,TPR_8|PF13181.2|1.1e+02,TPR_8|PF13181.2|2.1e+02,TPR_8|PF13181.2|2.8,TPR_8|PF13181.2|25,TPR_10|PF13374.2|49,TPR_10|PF13374.2|5.5e+02,TPR_10|PF13374.2|0.97,TPR_10|PF13374.2|56,TPR_10|PF13374.2|52,TPR_10|PF13374.2|2.1e+03,TPR_16|PF13432.2|2.2,TPR_16|PF13432.2|1.1e+03,TPR_16|PF13432.2|0.018,PYRIN|PF02758.12|32,PYRIN|PF02758.12|2e+02,PYRIN|PF02758.12|2.6,PYRIN|PF02758.12|1e+04,PYRIN|PF02758.12|12,PYRIN|PF02758.12|3.6e+03,TPR_1|PF00515.24|1.7e+03,TPR_1|PF00515.24|8.5e+03,TPR_1|PF00515.24|5.4e+03,TPR_1|PF00515.24|0.3,TPR_1|PF00515.24|1.7e+02,TPR_1|PF00515.24|3.2,TPR_1|PF00515.24|3.9 R_Transcript_360004:2-952(-)
AGGTGGGAGAGTGCTAGAATTGTGTTGAAAGAGATGGAGGAAAGTGATCATGTGAAGGCTGGATTGTTGAGAGATGCTGAGTTTATCGTTTCGGAGATGGAGAGAGTAAGGGTTTCGCCTGACGAGCATACTTATAGTTTGCTAATCGATGCGTATGCGAATGCAGGGAGGTGGGAGAGTGCTAGAATTGTTTTGAGAGAGATGGAGGAAAGTGATGATGTGAAGCCTAATTCCTTCGTGTTCAGTCGGTTGTTAGCTAGTTACCGCGATAAAGGGGACTGGCAAAAGTCGTTTCAGGTTCTTAGGGAGATGAGGAGTAGTGGTGTTGAGCCTGATAGGCATTTTTATAATGTGATGATTGATGCTTTCGGGAAGTATAATTGCCTTGATCATGCCATGGATACGTTCGAGAGGATGAAGTTGGAGGGGATTGAGCCAGATAATTGTACTTGGAATACGTTGATCGATTGTCATTGCAAGTGTGGGAGGCACGACAAAGCTGAGGAGTTGTTCGAGGAGATGAAGGAAAGTGGGTGTGTGCCTTGTACCACGACGTATAATATAATGATTAATTGTTATGGGGAGCAGGAGAAGTTGGATGAGGTTAAGAGCTTGTTGGGGAAGATGCAGGGTCAAGGCTTATTGCCGAATGTGGTCACTTATACGACATTGGTTGATATATATGGGCAGTCTGGTAGGTTTAAGGATGCTATTGAATGTTTGGAAGTCATGAAGGCTGGTGGGTTGAAACCTTTTGAGACTATGTACAATGCTCTCATCAATGCCTATGCTCAAAGGGGTTTATCAGACCAAGCAATTAATGCATTTAGACTCATGAGAGCAGATGGCCTGAAGCCAAGTATTTTAGCTCTTAATTCATTGATTAATGCATTTGGTGAGGACAGACGGGATACTGAGGCATTTGCTGTCTTGCAATATATGAAAGAAAAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_360004.p1 GENE.R_Transcript_360004~~R_Transcript_360004.p1 ORF type:internal len:318 (-),score=68.98,PPR_2|PF13041.2|2.7e+03,PPR_2|PF13041.2|2.4e-06,PPR_2|PF13041.2|2.3e-05,PPR_2|PF13041.2|3.7e-09,PPR_2|PF13041.2|5.2e-09,PPR_2|PF13041.2|2.1e-17,PPR_2|PF13041.2|3.9e-12,PPR_2|PF13041.2|1.8e-07,PPR_2|PF13041.2|2.7e-08,PPR_2|PF13041.2|0.018,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|12,PPR|PF01535.16|5.8e-06,PPR|PF01535.16|0.013,PPR|PF01535.16|4e-06,PPR|PF01535.16|6.1e-13,PPR|PF01535.16|1.6e-06,PPR|PF01535.16|6e-06,PPR|PF01535.16|4.8e-06,PPR|PF01535.16|0.072,PPR_1|PF12854.3|2.9e+03,PPR_1|PF12854.3|34,PPR_1|PF12854.3|8.9e-07,PPR_1|PF12854.3|0.2,PPR_1|PF12854.3|0.0001,PPR_1|PF12854.3|6e-15,PPR_1|PF12854.3|0.0001,PPR_1|PF12854.3|2.5e-09,PPR_1|PF12854.3|0.00061,PPR_1|PF12854.3|0.23,PPR_3|PF13812.2|43,PPR_3|PF13812.2|38,PPR_3|PF13812.2|4.2e-07,PPR_3|PF13812.2|0.0027,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|3.6e-09,PPR_3|PF13812.2|0.037,PPR_3|PF13812.2|5.3e-05,PPR_3|PF13812.2|1.2e-05,PPR_3|PF13812.2|0.3,ECSIT|PF06239.7|20,ECSIT|PF06239.7|0.0026,ECSIT|PF06239.7|22,ECSIT|PF06239.7|4.3,ECSIT|PF06239.7|6.9e+02,TPR_12|PF13424.2|12,TPR_12|PF13424.2|0.084,TPR_12|PF13424.2|5.4,TPR_12|PF13424.2|59,TPR_14|PF13428.2|1.4,TPR_14|PF13428.2|2e+02,TPR_14|PF13428.2|1.1e+02,TPR_14|PF13428.2|24,TPR_14|PF13428.2|4.2,TPR_7|PF13176.2|4.2e+02,TPR_7|PF13176.2|3.9e+02,TPR_7|PF13176.2|0.12,TPR_7|PF13176.2|0.13,TPR_7|PF13176.2|1.2e+02,TPR_19|PF14559.2|2.8,TPR_19|PF14559.2|1.4,TPR_19|PF14559.2|12,TPR_19|PF14559.2|7.1e+02,TPR_8|PF13181.2|51,TPR_8|PF13181.2|1.1e+02,TPR_8|PF13181.2|2.1e+02,TPR_8|PF13181.2|2.8,TPR_8|PF13181.2|25,TPR_10|PF13374.2|49,TPR_10|PF13374.2|5.5e+02,TPR_10|PF13374.2|0.97,TPR_10|PF13374.2|56,TPR_10|PF13374.2|52,TPR_10|PF13374.2|2.1e+03,TPR_16|PF13432.2|2.2,TPR_16|PF13432.2|1.1e+03,TPR_16|PF13432.2|0.018,PYRIN|PF02758.12|32,PYRIN|PF02758.12|2e+02,PYRIN|PF02758.12|2.6,PYRIN|PF02758.12|1e+04,PYRIN|PF02758.12|12,PYRIN|PF02758.12|3.6e+03,TPR_1|PF00515.24|1.7e+03,TPR_1|PF00515.24|8.5e+03,TPR_1|PF00515.24|5.4e+03,TPR_1|PF00515.24|0.3,TPR_1|PF00515.24|1.7e+02,TPR_1|PF00515.24|3.2,TPR_1|PF00515.24|3.9 R_Transcript_360004:2-952(-)
RWESARIVLKEMEESDHVKAGLLRDAEFIVSEMERVRVSPDEHTYSLLIDAYANAGRWESARIVLREMEESDDVKPNSFVFSRLLASYRDKGDWQKSFQVLREMRSSGVEPDRHFYNVMIDAFGKYNCLDHAMDTFERMKLEGIEPDNCTWNTLIDCHCKCGRHDKAEELFEEMKESGCVPCTTTYNIMINCYGEQEKLDEVKSLLGKMQGQGLLPNVVTYTTLVDIYGQSGRFKDAIECLEVMKAGGLKPFETMYNALINAYAQRGLSDQAINAFRLMRADGLKPSILALNSLINAFGEDRRDTEAFAVLQYMKEN

Click here to download the sequence:
Link to NCBI Protein BLAST