Transcript Information: R_Transcript_3609.p1


Annotated TAIR IDAT3G54460.1
Annotated Gene NameSNF2 domain-containing protein / helicase domain-containing protein / F-box family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:20162050-20167186 | Reverse length=1378
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.9411330580196
Replicate 21.9804911225395
Replicate 33.1059983181224
Condition 2: 8 Hour
Replicate 12.4720438450793
Replicate 23.1473311950379
Replicate 34.8020841655998
Condition 3: 24 Hour
Replicate 13.6373828695331
Replicate 22.7630022191585
Replicate 33.8710752578153


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_3609.p1 GENE.R_Transcript_3609~~R_Transcript_3609.p1 ORF type:complete len:1357 (+),score=255.47,SNF2_N|PF00176.19|1.6e-84,zf-CW|PF07496.11|4.3e-13,zf-CW|PF07496.11|3.4e+03,Helicase_C|PF00271.27|1.8e-11,Helicase_C|PF00271.27|3.1e+03 R_Transcript_3609:47-4117(+)
ATGGAGGTCGATTCTTCATCATCATCATCAATAATTCCAGAGCACAAATTATGCGGGTTCTTCTCAACAGTCCTGAAACCCTCCAATCCTCAATCAAAACAAACCCTAGAAATCGGCACTCTTCTCCACATCTTCTCCGAGGGCCCTGCCGTCGGCTTCGAATCCGATGCCGGCGTCATCTTCTCCCCAATGTCCTCGAATTGGGAGGAAACCAAAACGACGTCGCCTAATACTACAACTACGAAGAAGAAAAGGAAGGCGGTGAAGAAGAAGATAGGGGTAGTAGGTCACGGGAGTGGGACAGTGAGTGTGGTTCATCAAGTCAGGACTCTCGTTAATCAGAAGTGCTTGAAGATTGTTGCCAGAATTGTTGGTCTTGTGATTCCAGAAAATGAGAATGAGAATAATAATAATGAAGAGGAGGATTTAAGGGTGGTGGCATTAGTGGATATTTATTTGCCTGTGACAGTTTGGTCTTCTCAGTGGCAGTTTCCTAGGTCTTCTACTACTGCTGCTGCTCTGTTTCGCCATTTGAGTTGTGACTGGGACAAGAGAAGTTCAATTCTTAAAGAGGGCTACGATAAGAATGTATTTGAAGACCGTAAGTGTGTATGGAATCTTGCTGACTGTCATGTTCTCGGATGTAAGCGGCATTCAGATGTTCCTGATTCCTCTAATAGAAAGGGATATGAACTTCATGAGATCTTTAAGAGCTTACCTAGCTTGACCAGGGAATTCAGACCTGTTTCTTCAAGAATATCACCTAATGATTTGGATTCGACGTGTGGTATTTGGGATTTAACGGATGATATTCTGGTCAACATTGTATCTACTCTGCATCCGAGAGATCTTGTGAGGGTTTCTGCTACATGTCGTCATCTGAGGTTCTTGTGCGCACCAATTATGCCATGTATAAAGCTTAAACTATTTCCTCATCAACAAGCTGCTGTTGAGTGGATGGTGCAACGCGAACGAAACGTTACTCGATTGTGTCATCCCCTGTACTTGGACTTCATAACTGAAGATGGGTTTGCTTTCTACATTAACATTGTCTCTGGTGAATTAGTCACTGGATCGGCTCCTACTATTAGTGATTTTCGTGGGGGAATGTTTTGTGATGAGCCTGGACTTGGTAAAACCATTACAGCCCTTTCTCTTGTTTTGAAGACCCAAGGAACACTGGCAGATTCCCCAGAAGGGGCTCAAATAATCTGGTGCACACATAGTGGTGATCAGAAATGTGGCTACTATGAGTGCAGTGGCAGTAGATATTCAGGTTTGACTATCCCATCATCTGGACAAAAATGTACAAGTCAGAATGATCGAAGAAGCCAATTTTCTCCTAATGAGTTGGTTCCCAAGAACTACAAGACCCCAAAGAAGTCCCGCTTATCAACTCCTAGTAGGCAGAATGAGTCATCCATGTATTCTTGTCCAGAAATTCTTGCTGTGACAACACCGGAGCTTTCACGTTCGACACCTGCAACATGTGTAGTGCGGTGCACCAGGAGCTTGAATCGTGTTAAGAAAAATCTTCTCCATACTTATGAAGGGACACTTGGACATCCTAAAGACACTAAGACTGGAAGGTATTTAGGCAAACAGAAGCACTCTGCCAGCAGTGTGGCTAATGTTGCGCTGGAGAAGCAATTTGGGACCTCATATTCTTATCCTTTTGCAAACAAAAGGCAAAGGAAGGATTCTGATGAGCATTGTTTTGTATACAATGAAACATGGGTTCAGTGTGATGCTTGTCGGAAATGGCGGAGGGTTTCGGATGACAAGCTAGCTGATTCAACAGCTGCGTGGTTTTGCAGTTTGAACTCTGATCCCTTGCATCAGAGTTGCAATGCTCCTGAAGAATCCTTTGATGATGGCCAGCCCATTACTTATTTGCCTGGATTTTGCAGCAAAGAAACTTCTGGTGGGCTGCCTCAAAATGTAGCATTCTTTACTAGTGTCCTAAAGGAGCATTACTCATTACTCAACTGTCAAACAAAGAAGGCTTTGACTTGGCTGGCTAGACTTCCTCCTCACAAACTTTCAGAAACAGAGACAGTTGGATTGGTTCGGCCTGGTCAGGTAACTACACAAGAGGCCAATGGTTTCCACAAAATTTTTCAATCATTTGGTCTTGTGCAGAGGATGGAGCAGGGTATCAGCCGGTGGTTTTATCCCAAAAAGATAGACAATCTGGTTTTGGATTTGCCTGCTCTCAGAATTGCACTCTGTGAACCACTAGATTCATTCAGGATGTACTTGTCAAGAGCAACACTCATTGTTGTTCCATCAAATTTAGTTGATCACTGGAAAGCACAGATCCAGAAGCATGTAAGACCTGGGCAACTGCGGGTTTATGTTTGGACTGACCATAAGAAGCCTTCTGCACATAGCCTTGCTTGGGACTATGATGTTGTTATTACAACCTTTAGCCGGCTCAGTGCTGAGTGGAATCCTCGTAAGAGAAGTGCCTTGATGCAAGTACATTGGCTTAGGGTCATGCTAGATGAGGGACACACCCTTGGTTCGAGCATAAACCTGACTAATAAGATGCAAATGGCAGTTTCATTGAATGCTACAAATCGCTGGATATTAACAGGGACGCCCACACCTAATACTCCTAACAGTCAGGTCGCACAGCTTCAGCCTATGCTGAAATTTCTCCATGATGAAGCATATGGAGAAAATTATAAAAACTGGGATGCTGTCATCCTTAAGCCTTTCGAGGCAGAGGTAAAGGAGGGCAGGTTGCGTCTGGTGCAGTTACTGAAGAGGTGCATGATTAGTGCAAGAAAAACTGACTTGCAATGCATTCCGCCATGTCTTAAGAAAACGACATTCATTAATTTTACAGATGAGCATGCAAAAACTTACAATGAGCTTGTTGTTACTGTTCGACGTAACATTTTGATGGCAGATTGGAATGATCCTTCTCATGTTGAAAGCTTACTTAACCCGAAGCAGTGGAAATTTAGGAGTACCACTATTAGAAATGTCAGACTGTCTTGCTGTGTAGCTGGGCATATTAAAGTAGCACATGCTGGCGAGGATATTCAAGAAACAATGGATATTTTAGTTCAAAGTGGTTTGGATCCACTTTCATTGGAATATGCTTTCATAAAATACAACCTTTCTTTTGGTGGTAACTGCCAGAGATGCCAAGAATGGTGCCGCCTACCTATTGTCACACCATGCAGGCATCTTCTGTGCCTTGATTGTGTTGCTTTGGATAGTGAAAAGTGTACATTTCCTGGCTGTGGCTTTGCTTATGAGATGCAGAGTCCTGAAATATTAACACGACCTGAAAACCCAAATCCAAAGTGGGCTGTCCCAAAAGACCTTATCGAGCTACAACCATCATATAAGCAGGATAGCTGGGATCCAGATTGGCAATCGACATCTAGCAGTAAAGTTGCATATCTTGTTCAGAGATTGAAGGATATTCAGGCTGCTAATAGCCCGTTAGATTGCTCAAGAGATGATGGAAATTATGCAGAAACAAAGCATGACCTTGTTTCACATCCTGAATTGCTTAGAAGACCAAGAAATGAGACATCAGTTGAGAAAGTCCTGGTATTTTCTCAGTTCCTTGAGCACATACATGTCATTGAACAGCAGTTAGCCATTGCGGATATCAAATATGTTGGGATGTTTAGTCCAATGAATGCAAGCAATAAGAAAAGGTCACTCTCCGTCTTTCAGTATGATCCAAGTTGCATGGTGCTTGTAATGGATGGGAGTGCTGCACTAGGTCTTGATTTGAGCTTTGTGACTCACGTTTTCCTGATGGAACCAATCTGGGATAGAAGCATGGAGGAGCAAGTGATCAGTCGTGCTCATCGGATGGGGGCAGTACGTCCTATTTATGTTGAGACCTTAGCAATGCGTGGTACTATTGAAGAGCAAATGCTGGAATTTTTGCAGAATATTGATGAGTGCAGAAGGTTATTGAAAGAAGACCATGAGAAAACTGAACATGAAGGAGCACGAGCACACAAATCATTACATGATTTCGCAGAGAGGAATTATCTGGCTCGTTTGGGCATGGTGCGAACAAAGGCACAAAGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_3609.p1 GENE.R_Transcript_3609~~R_Transcript_3609.p1 ORF type:complete len:1357 (+),score=255.47,SNF2_N|PF00176.19|1.6e-84,zf-CW|PF07496.11|4.3e-13,zf-CW|PF07496.11|3.4e+03,Helicase_C|PF00271.27|1.8e-11,Helicase_C|PF00271.27|3.1e+03 R_Transcript_3609:47-4117(+)
MEVDSSSSSSIIPEHKLCGFFSTVLKPSNPQSKQTLEIGTLLHIFSEGPAVGFESDAGVIFSPMSSNWEETKTTSPNTTTTKKKRKAVKKKIGVVGHGSGTVSVVHQVRTLVNQKCLKIVARIVGLVIPENENENNNNEEEDLRVVALVDIYLPVTVWSSQWQFPRSSTTAAALFRHLSCDWDKRSSILKEGYDKNVFEDRKCVWNLADCHVLGCKRHSDVPDSSNRKGYELHEIFKSLPSLTREFRPVSSRISPNDLDSTCGIWDLTDDILVNIVSTLHPRDLVRVSATCRHLRFLCAPIMPCIKLKLFPHQQAAVEWMVQRERNVTRLCHPLYLDFITEDGFAFYINIVSGELVTGSAPTISDFRGGMFCDEPGLGKTITALSLVLKTQGTLADSPEGAQIIWCTHSGDQKCGYYECSGSRYSGLTIPSSGQKCTSQNDRRSQFSPNELVPKNYKTPKKSRLSTPSRQNESSMYSCPEILAVTTPELSRSTPATCVVRCTRSLNRVKKNLLHTYEGTLGHPKDTKTGRYLGKQKHSASSVANVALEKQFGTSYSYPFANKRQRKDSDEHCFVYNETWVQCDACRKWRRVSDDKLADSTAAWFCSLNSDPLHQSCNAPEESFDDGQPITYLPGFCSKETSGGLPQNVAFFTSVLKEHYSLLNCQTKKALTWLARLPPHKLSETETVGLVRPGQVTTQEANGFHKIFQSFGLVQRMEQGISRWFYPKKIDNLVLDLPALRIALCEPLDSFRMYLSRATLIVVPSNLVDHWKAQIQKHVRPGQLRVYVWTDHKKPSAHSLAWDYDVVITTFSRLSAEWNPRKRSALMQVHWLRVMLDEGHTLGSSINLTNKMQMAVSLNATNRWILTGTPTPNTPNSQVAQLQPMLKFLHDEAYGENYKNWDAVILKPFEAEVKEGRLRLVQLLKRCMISARKTDLQCIPPCLKKTTFINFTDEHAKTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVAHAGEDIQETMDILVQSGLDPLSLEYAFIKYNLSFGGNCQRCQEWCRLPIVTPCRHLLCLDCVALDSEKCTFPGCGFAYEMQSPEILTRPENPNPKWAVPKDLIELQPSYKQDSWDPDWQSTSSSKVAYLVQRLKDIQAANSPLDCSRDDGNYAETKHDLVSHPELLRRPRNETSVEKVLVFSQFLEHIHVIEQQLAIADIKYVGMFSPMNASNKKRSLSVFQYDPSCMVLVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGAVRPIYVETLAMRGTIEEQMLEFLQNIDECRRLLKEDHEKTEHEGARAHKSLHDFAERNYLARLGMVRTKAQR*

Click here to download the sequence:
Link to NCBI Protein BLAST