Transcript Information: R_Transcript_361819.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value7E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.69065257666503
Replicate 20.45397406305509
Replicate 30.43337071127856
Condition 2: 8 Hour
Replicate 10.99267020056399
Replicate 20.78565260523085
Replicate 31.0792849558068
Condition 3: 24 Hour
Replicate 10.31024063821222
Replicate 20.059608807812371
Replicate 30.17746787583971


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_361819.p1 GENE.R_Transcript_361819~~R_Transcript_361819.p1 ORF type:complete len:370 (+),score=64.21,UBN2|PF14223.2|2.7e-17,UBN2_3|PF14244.2|8e-14,UBN2_2|PF14227.2|8.7e-12,Retrotrans_gag|PF03732.13|3.2e+03,Retrotrans_gag|PF03732.13|1.8e-06 R_Transcript_361819:692-1801(+)
ATGACTCAAAGTTCTGGAAATTCCACATCAAACTCAACAACCATTCTTTCCTTTCTAGGAAACTCTTCAACCAATTTTACTATCCCAAACATCTCTGTTCGGCTTGAACTTGACAACCATGACTCTTGGCGGCAAATTGTCAAGCAAGCTCTTGAAGCTTTTGAACTCAATCACTTTCTTAGTGAGAATTCAGTTCCTCCTATTAACCTCATTGTGCCAGACAGTGATCCACCTGAAACTCAACCAAACCCAGATTATACGGTTTGGAAAAAGAAAGATCGTTTGGTTTTGTTGTGGCTTAAGTCCACCATATCACCTCGCATTCTCGGTTACGTATCCCGAGCCAATACCACTCATGAAACATGGACTACACTTGATCGAGTTTTTCAAACTCAAGCACGCTCTCACATTATGTATGTTCGTCATCAATTGCAAAATCTCAAGAAAGAATCTCTATCTATTCTTGAGTATGTTGAGAAGAAAAGACTTCTTGCTAATAGTCTCTCCGAAGCACAGGCTCCGATCAGTGAAGATGAATTAGTTTCTCATATTCTATTTGGACTAAACTCCAGTTATGGTCCCTTTCGTACGAGTCTTAATATTCGTCAAGAACCTATTTCTTGTGTTGAGTTACTTGGATTGCTTCTTCAAGAGGAGCAACGCTTAAATGAAGAAACTCAATATCTTGATGCTTCAGCCAATGTAGCGCAGAGGTCCAGTACAACAAATCATGGTTTTCAAAAGTCCAGACCTGGTTTTTCTTCTTCCCGTGGTGTTCCCTATAACTCCACTCGCTCTTCCCAACCTCATGATAATCTGTCAAAATGGAAACGAATTGTTTGCCAAATTTGTGAAAAACCTGGACATGGTGCTTGTGATTGCTACCAACGTGACAACAAGGAAAATTATCCTCCTCGGCGACAAACTCGGTCTGCTAATCTTGTCTCTGCTAAACCAAGTGATATAGTTGATCCCTCTTGGTACATTGACTCTGGAGCCACGAATCATGTTACTGCTGATTTACAAAAGCTTTTTGTTGCTTCCGCTTATGATGGTGAGGATGGTGTTGCAGTTGGCAATGGGACACATACTGCTGCGGGGACGTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_361819.p1 GENE.R_Transcript_361819~~R_Transcript_361819.p1 ORF type:complete len:370 (+),score=64.21,UBN2|PF14223.2|2.7e-17,UBN2_3|PF14244.2|8e-14,UBN2_2|PF14227.2|8.7e-12,Retrotrans_gag|PF03732.13|3.2e+03,Retrotrans_gag|PF03732.13|1.8e-06 R_Transcript_361819:692-1801(+)
MTQSSGNSTSNSTTILSFLGNSSTNFTIPNISVRLELDNHDSWRQIVKQALEAFELNHFLSENSVPPINLIVPDSDPPETQPNPDYTVWKKKDRLVLLWLKSTISPRILGYVSRANTTHETWTTLDRVFQTQARSHIMYVRHQLQNLKKESLSILEYVEKKRLLANSLSEAQAPISEDELVSHILFGLNSSYGPFRTSLNIRQEPISCVELLGLLLQEEQRLNEETQYLDASANVAQRSSTTNHGFQKSRPGFSSSRGVPYNSTRSSQPHDNLSKWKRIVCQICEKPGHGACDCYQRDNKENYPPRRQTRSANLVSAKPSDIVDPSWYIDSGATNHVTADLQKLFVASAYDGEDGVAVGNGTHTAAGTS*

Click here to download the sequence:
Link to NCBI Protein BLAST