Transcript Information: R_Transcript_36193.p1


Annotated TAIR IDAT5G23890.1
Annotated Gene NameLOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer Homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:8058789-8063005 | Forward length=946
E-Value2.4E-254
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.5148413487364
Replicate 26.4552455535214
Replicate 38.7240553823644
Condition 2: 8 Hour
Replicate 13.1258550996483
Replicate 28.730259186931
Replicate 38.5351190363947
Condition 3: 24 Hour
Replicate 16.2034925913158
Replicate 26.5696515844273
Replicate 37.9401141470553


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_36193.p1 GENE.R_Transcript_36193~~R_Transcript_36193.p1 ORF type:complete len:940 (+),score=296.81,SLH|PF00395.16|7.3e+03,SLH|PF00395.16|0.081,SLH|PF00395.16|0.45 R_Transcript_36193:167-2986(+)
ATGACATCTTTATCAACAGCAACATGGTCTACGACCTCTTATCAGCTCAAATTCAACTTCAAGTTGAAGAAATATTCAACCCCTTCATTAATGTTTTTAAGGGGTAGAGTTTCAAGCTCCAATGATTGTCACAAGTTCCCGGTTTGCTGTGTTGCTCAAGATGGGGCAAAGAGTGAGAGTAGTAATAGCAGTAGTGAATCAGAACGACCTCCTTCTGCTAATTCTTGGAATGGTTCTTCAGTTGATACTGCTTTGAGTGATTGGTTCGGTAACCCTGAACTGTCTGGTGATTCTGACCACAGGCAGCAGGGAATTGGAGGAATTTTGGGAGTAGGGCTTGCCAGCGTATTTCTTGTTGCGGGTATTACCTTTGCAGCGATGTCAATTGGCAAGCGGAGCAGCTCAAGGCCAAGACAAGAGATGGAGCCCTTGACGGCACAGCAAGAAGTGTTGTTAACTTCAGAAGAGAAGGTTCACACAGAGGAAAATGATGAAAGTGCGAAGGATGGTGTTAAAGATGAAAGAAACCTGCCAACTGATGATTATGCAGAAAATAAAACAGGTGTTCCTGATGCTTCCACTCAAGATAATTTGCAATCTGATTCTATGGTTCAAGATGTGCATAATTCCGATGCAACCTCAACTTCATCTAGTATTGCTCAACTAGAAAATGCTGATGTGACATCTGGCTTTGTAGATTCACAGAACATCCTTGCTGTGAGTGAAACTGAAGATAATGTGGATGCCGCTGTACTATCTAATTCTGATACTGATGCTGACTTCCTTGCCACAAATGACCAGCAAGCCACCCTTGCTGAAAGCCAAGGAGACTCTCTCCATACTGCACTTGAATCATCTTCTAGTACTAATTCTCATGTGTCTTCCAATTCTCAAGCTCCAGATAGCATATTTGATGCTAATTTGGAGGAAGGTCTAGAAACTCAAAATGCTCCCCAGAGTGATATAGGAGTTGCTGCATCAGTTTCAAGCAATGATGATGTTGAGTTGAGCAAGCCACTTCATTTTTCTGGTGAAACTAATGAGTCACTGACTAGTGATAATAGTTCTAAGGAGGAGGAACCTTCTGGTATAGCATCTTCTGTAGCAATATCATCTGCTGATAAGCAGGAACTAGATGCCAATGATGGGAGACTTGCATCAGAGTCCCCCAGGAATGCCTTTACCTCTAGAGGAATTCCTGCACCGTCTCTTCTTTCTGCAGCACTTCAGGTGCCTCCTGGAAAGGTTTTGGTTCCTGCTGTCATTGATCAAACTCAAGGGCAAGCGTTGGCAGCATTGCAAGTCTTGAAGGTCATTGAGAGTGATGCTCAACCAGGTGATCTTTGTACGCGTCGTGAGTATGCCCGTTGGCTAGTTTCTGCTAGTAGTGCTCTGTCACGAAACTCGATTTCAAAGGTCTATCCTGCTATGTACATAGAAAATGTTACTGAGCTTGCATTTGATGATATCACACCTGAAGATCCAGATTTCACATGCATCCAAGGCTTGGCAGAAGCGGGTTTGATTTCTAGCAAGCTTTCAAAACGTGATATGCTTTCTTCTCCTGAAGAGGAGATAGGCTCCTTTTTCTTCCATCCTGATAGCCCTCTGTCTCGTCAGGATCTTGTCACCTGGAAGATGGCCCTAGAAAAGAGGGAGTTGCCTGAAGCTGACAAAAAGATCCTTCACCTGCGTTCCGGCTTCATTGACATCGACAAGATTGACCCAGATGCATGGCCTGCACTTATGGGTGACTTATCTGCAGGAGAGCAAGGAATTGTGGCTCTTGCCTTTGGCTACACAAGACTTTTTCAGCCGGATAAGCCTGTCACAAAAGGCCAAGCTGCAATTGCTCTTGCAACTGGGGAAGCAGCTGACATAGTAAGTGAAGAACTTGCTCGTATTGAAGCTGAGTCTGTTGCTGAAAATGCAGTTGCTACACATAATGCATTGGTAGCAGAAGTCGAAAAGGATATCAATGCAAGTTTTGAAAAGGAGCTTCTGATGGAGAGGGAGAAAATAGAAGCTGTGCAGAAAATGGCTGAAGAGGCAAGGAAAGAAGTTGAAAGGCTTAGAGGTGAGAGAGAAGCAGAAAATGCTGCCCTGACAAAGGAACGGGCTGCTATTGAGTCAGAAATGGAAGTTCTTTCTCGATTGAGGCATGAGTTGGAGGAACAGTTGCAGAGTCTCATGAGTAACAAGGTTGAGATATCATATGAGAAGGAAAGGATTGAAAGTCTCCGGAAAGAGACTGAAGAAGAGAACCAGGCGATTTCACGGTTACAATATGAGCTAGAGGTGGAGCGGAAGGCTTTGTCAATGGCCCGGGCATGGGCTGAGGATGAAGCAAAAAGAGTGCAAGAACATGCAAAAGCCCTAGAAGAAGCGAGAGATCGCTGGGAGAGACAAGGCATCAAAGTCGTGGTTGATGAGGGTCTCCAGGAGGAGGCTTCAGCAGGAGTCACATGGGTCAATGTGGGGAAGAAACTGTCAGTAGAAGAAACTGTTGACAGGGCTGAAAATTTGACTGATAAGCTTAAGTCTATGGCTGCTGAAGTTAGCGGGAAATCTAAAGAGATAATAAACAAGATTGTCGAAAAGATGCAGAACCTAATACTAGTTCTGAAAGAATGGATCTCCCAAGCAGGCAGGCAAACAGCTGAATTCAAAGATGCTGCCAGTGCAAAAATAGGCACTTCCGTACAAGAGTTGCAACAACAGGCAGCTGGTTTTGGCACAACAGTTACAGAAGGAGCTAAGCGTGCGGTTGGAGACTGTAGAGAAGGTGTTGATAAACTTACTCAAAGGTTCAAGACGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_36193.p1 GENE.R_Transcript_36193~~R_Transcript_36193.p1 ORF type:complete len:940 (+),score=296.81,SLH|PF00395.16|7.3e+03,SLH|PF00395.16|0.081,SLH|PF00395.16|0.45 R_Transcript_36193:167-2986(+)
MTSLSTATWSTTSYQLKFNFKLKKYSTPSLMFLRGRVSSSNDCHKFPVCCVAQDGAKSESSNSSSESERPPSANSWNGSSVDTALSDWFGNPELSGDSDHRQQGIGGILGVGLASVFLVAGITFAAMSIGKRSSSRPRQEMEPLTAQQEVLLTSEEKVHTEENDESAKDGVKDERNLPTDDYAENKTGVPDASTQDNLQSDSMVQDVHNSDATSTSSSIAQLENADVTSGFVDSQNILAVSETEDNVDAAVLSNSDTDADFLATNDQQATLAESQGDSLHTALESSSSTNSHVSSNSQAPDSIFDANLEEGLETQNAPQSDIGVAASVSSNDDVELSKPLHFSGETNESLTSDNSSKEEEPSGIASSVAISSADKQELDANDGRLASESPRNAFTSRGIPAPSLLSAALQVPPGKVLVPAVIDQTQGQALAALQVLKVIESDAQPGDLCTRREYARWLVSASSALSRNSISKVYPAMYIENVTELAFDDITPEDPDFTCIQGLAEAGLISSKLSKRDMLSSPEEEIGSFFFHPDSPLSRQDLVTWKMALEKRELPEADKKILHLRSGFIDIDKIDPDAWPALMGDLSAGEQGIVALAFGYTRLFQPDKPVTKGQAAIALATGEAADIVSEELARIEAESVAENAVATHNALVAEVEKDINASFEKELLMEREKIEAVQKMAEEARKEVERLRGEREAENAALTKERAAIESEMEVLSRLRHELEEQLQSLMSNKVEISYEKERIESLRKETEEENQAISRLQYELEVERKALSMARAWAEDEAKRVQEHAKALEEARDRWERQGIKVVVDEGLQEEASAGVTWVNVGKKLSVEETVDRAENLTDKLKSMAAEVSGKSKEIINKIVEKMQNLILVLKEWISQAGRQTAEFKDAASAKIGTSVQELQQQAAGFGTTVTEGAKRAVGDCREGVDKLTQRFKT*

Click here to download the sequence:
Link to NCBI Protein BLAST