Transcript Information: R_Transcript_36196.p1


Annotated TAIR IDAT5G23890.1
Annotated Gene NameLOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer Homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:8058789-8063005 | Forward length=946
E-Value1E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.7496447592044
Replicate 21.2113250240172
Replicate 32.5696660764915
Condition 2: 8 Hour
Replicate 11.3341657182794
Replicate 20.35834746540362
Replicate 32.3271295667163
Condition 3: 24 Hour
Replicate 12.1338987487289
Replicate 20.98965905278231
Replicate 32.4553514873122


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_36196.p1 GENE.R_Transcript_36196~~R_Transcript_36196.p1 ORF type:3prime_partial len:312 (+),score=92.31 R_Transcript_36196:464-1396(+)
ATGACATCTTTATCAACAACAACGTGGTCTCCTACCTCTTATCAGCTCAAATTCAACTTCAAGTTGAAGAAATATTCAACCCCTTCATTAATGTTTTTAAGGGGTAGAGTTTCAAGCTCCAATGATTGTCACAAGTTCCCGGTTTGCTGTGTTGCTCAAGATGGGGCAAAGAGTGATAGTAATAGTAGTAGTGAATCAGAAGGAACTCGTTCTGCTAATTTTTGGAATGGTTCTTCAGTTGATGCTGCTTTGAGTGATTGGTTTGGTAACCCTGAACTATCTGGTGATTCTAATCACAAGCAGGGAATTGGAGGAATTTTGGGAGTAGGGCTTGCCAGCGTATTTCTTGTTGCGGGTATTACCTTTGCAGCGATGTCAATTGGCAAGCGGAGCAGCTCAAGGCCAAGACAAGAGATGGAGCCCTTGACGGCACAGCAAGAAGTGTTGTTAACTTCAGAAGATAATGTTCTCATAGAGGAAAATGATGAAAGTGCGGAGGATAGTGTTAAAGATGAAAGAAACCTGCCAACTGATGATTATGCAGAAAATAAAACAGATTCACAGAACATCCTTGCTGTGAGTGAAACTGAAGATAATGTGGATGCCGCTGTACTATCTAATTCTGATACTGATGCTGACTTCCTTGCCACAAATGACCAGCAAGCCACCCTTGCTGAAAGCCAAGGAGACTCTCTCCATACTGCACTTGAATCATCTTCTAGTACTAATTCTCATGTGTCTTCCAATTCTCAAGCTCCAGATAGCATATTTGATGCTAATTTGGAGGAAGGTCTAGAAACTCAAAATGCTCCCCAGAGTGATATAGGAGTTGCTGCATCAGTTTCAAGCAATGATGATGTTGAGTTGAGCAAGCCACTTCATTTTTCTGGTGAAACTAATGAGTCACTGACTAGTGATAATAGTTCTAAGGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_36196.p1 GENE.R_Transcript_36196~~R_Transcript_36196.p1 ORF type:3prime_partial len:312 (+),score=92.31 R_Transcript_36196:464-1396(+)
MTSLSTTTWSPTSYQLKFNFKLKKYSTPSLMFLRGRVSSSNDCHKFPVCCVAQDGAKSDSNSSSESEGTRSANFWNGSSVDAALSDWFGNPELSGDSNHKQGIGGILGVGLASVFLVAGITFAAMSIGKRSSSRPRQEMEPLTAQQEVLLTSEDNVLIEENDESAEDSVKDERNLPTDDYAENKTDSQNILAVSETEDNVDAAVLSNSDTDADFLATNDQQATLAESQGDSLHTALESSSSTNSHVSSNSQAPDSIFDANLEEGLETQNAPQSDIGVAASVSSNDDVELSKPLHFSGETNESLTSDNSSKE

Click here to download the sequence:
Link to NCBI Protein BLAST