Transcript Information: R_Transcript_36197.p1


Annotated TAIR IDAT5G23890.1
Annotated Gene NameLOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer Homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:8058789-8063005 | Forward length=946
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.401128588722
Replicate 26.1698625804317
Replicate 35.2723887651479
Condition 2: 8 Hour
Replicate 110.15000658707
Replicate 26.7957093416787
Replicate 310.62731169283
Condition 3: 24 Hour
Replicate 19.5678906099817
Replicate 27.7131799248611
Replicate 37.189927573126


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_36197.p1 GENE.R_Transcript_36197~~R_Transcript_36197.p1 ORF type:complete len:895 (+),score=281.70,SLH|PF00395.16|0.076,SLH|PF00395.16|0.43 R_Transcript_36197:167-2851(+)
ATGACATCTTTATCAACAGCAACATGGTCTACGACCTCTTATCAGCTCAAATTCAACTTCAAGTTGAAGAAATATTCAACCCCTTCATTAATGTTTTTAAGGGGTAGAGTTTCAAGCTCCAATGATTGTCACAAGTTCCCGGTTTGCTGTGTTGCTCAAGATGGGGCAAAGAGTGAGAGTAGTAATAGCAGTAGTGAATCAGAACGACCTCCTTCTGCTAATTCTTGGAATGGTTCTTCAGTTGATACTGCTTTGAGTGATTGGTTCGGTAACCCTGAACTGTCTGGTGATTCTGACCACAGGCAGCAGGGAATTGGAGGAATTTTGGGAGTAGGGCTTGCCAGCGTATTTCTTGTTGCGGGTATTACCTTTGCAGCGATGTCAATTGGCAAGCGGAGCAGCTCAAGGCCAAGACAAGAGATGGAGCCCTTGACGGCACAGCAAGAAGTGTTGTTAACTTCAGAAGAGAAGGTTCACACAGAGGAAAATGATGAAAGTGCGAAGGATGGTGTTAAAGATGAAAGAAACCTGCCAACTGATGATTATGCAGAAAATAAAACAGATTCACAGAACATCCTTGCTGTGAGTGAAACTGAAGATAATGTGGATGCCGCTGTACTATCTAATTCTGATACTGATGCTGACTTCCTTGCCACAAATGACCAGCAAGCCACCCTTGCTGAAAGCCAAGGAGACTCTCTCCATACTGCACTTGAATCATCTTCTAGTACTAATTCTCATGTGTCTTCCAATTCTCAAGCTCCAGATAGCATATTTGATGCTAATTTGGAGGAAGGTCTAGAAACTCAAAATGCTCCCCAGAGTGATATAGGAGTTGCTGCATCAGTTTCAAGCAATGATGATGTTGAGTTGAGCAAGCCACTTCATTTTTCTGGTGAAACTAATGAGTCACTGACTAGTGATAATAGTTCTAAGGAGGAGGAACCTTCTGGTATAGCATCTTCTGTAGCAATATCATCTGCTGATAAGCAGGAACTAGATGCCAATGATGGGAGACTTGCATCAGAGTCCCCCAGGAATGCCTTTACCTCTAGAGGAATTCCTGCACCGTCTCTTCTTTCTGCAGCACTTCAGGTGCCTCCTGGAAAGGTTTTGGTTCCTGCTGTCATTGATCAAACTCAAGGGCAAGCGTTGGCAGCATTGCAAGTCTTGAAGGTCATTGAGAGTGATGCTCAACCAGGTGATCTTTGTACGCGTCGTGAGTATGCCCGTTGGCTAGTTTCTGCTAGTAGTGCTCTGTCACGAAACTCGATTTCAAAGGTCTATCCTGCTATGTACATAGAAAATGTTACTGAGCTTGCATTTGATGATATCACACCTGAAGATCCAGATTTCACATGCATCCAAGGCTTGGCAGAAGCGGGTTTGATTTCTAGCAAGCTTTCAAAACGTGATATGCTTTCTTCTCCTGAAGAGGAGATAGGCTCCTTTTTCTTCCATCCTGATAGCCCTCTGTCTCGTCAGGATCTTGTCACCTGGAAGATGGCCCTAGAAAAGAGGGAGTTGCCTGAAGCTGACAAAAAGATCCTTCACCTGCGTTCCGGCTTCATTGACATCGACAAGATTGACCCAGATGCATGGCCTGCACTTATGGGTGACTTATCTGCAGGAGAGCAAGGAATTGTGGCTCTTGCCTTTGGCTACACAAGACTTTTTCAGCCGGATAAGCCTGTCACAAAAGGCCAAGCTGCAATTGCTCTTGCAACTGGGGAAGCAGCTGACATAGTAAGTGAAGAACTTGCTCGTATTGAAGCTGAGTCTGTTGCTGAAAATGCAGTTGCTACACATAATGCATTGGTAGCAGAAGTCGAAAAGGATATCAATGCAAGTTTTGAAAAGGAGCTTCTGATGGAGAGGGAGAAAATAGAAGCTGTGCAGAAAATGGCTGAAGAGGCAAGGAAAGAAGTTGAAAGGCTTAGAGGTGAGAGAGAAGCAGAAAATGCTGCCCTGACAAAGGAACGGGCTGCTATTGAGTCAGAAATGGAAGTTCTTTCTCGATTGAGGCATGAGTTGGAGGAACAGTTGCAGAGTCTCATGAGTAACAAGGTTGAGATATCATATGAGAAGGAAAGGATTGAAAGTCTCCGGAAAGAGACTGAAGAAGAGAACCAGGCGATTTCACGGTTACAATATGAGCTAGAGGTGGAGCGGAAGGCTTTGTCAATGGCCCGGGCATGGGCTGAGGATGAAGCAAAAAGAGTGCAAGAACATGCAAAAGCCCTAGAAGAAGCGAGAGATCGCTGGGAGAGACAAGGCATCAAAGTCGTGGTTGATGAGGGTCTCCAGGAGGAGGCTTCAGCAGGAGTCACATGGGTCAATGTGGGGAAGAAACTGTCAGTAGAAGAAACTGTTGACAGGGCTGAAAATTTGACTGATAAGCTTAAGTCTATGGCTGCTGAAGTTAGCGGGAAATCTAAAGAGATAATAAACAAGATTGTCGAAAAGATGCAGAACCTAATACTAGTTCTGAAAGAATGGATCTCCCAAGCAGGCAGGCAAACAGCTGAATTCAAAGATGCTGCCAGTGCAAAAATAGGCACTTCCGTACAAGAGTTGCAACAACAGGCAGCTGGTTTTGGCACAACAGTTACAGAAGGAGCTAAGCGTGCGGTTGGAGACTGTAGAGAAGGTGTTGATAAACTTACTCAAAGGTTCAAGACGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_36197.p1 GENE.R_Transcript_36197~~R_Transcript_36197.p1 ORF type:complete len:895 (+),score=281.70,SLH|PF00395.16|0.076,SLH|PF00395.16|0.43 R_Transcript_36197:167-2851(+)
MTSLSTATWSTTSYQLKFNFKLKKYSTPSLMFLRGRVSSSNDCHKFPVCCVAQDGAKSESSNSSSESERPPSANSWNGSSVDTALSDWFGNPELSGDSDHRQQGIGGILGVGLASVFLVAGITFAAMSIGKRSSSRPRQEMEPLTAQQEVLLTSEEKVHTEENDESAKDGVKDERNLPTDDYAENKTDSQNILAVSETEDNVDAAVLSNSDTDADFLATNDQQATLAESQGDSLHTALESSSSTNSHVSSNSQAPDSIFDANLEEGLETQNAPQSDIGVAASVSSNDDVELSKPLHFSGETNESLTSDNSSKEEEPSGIASSVAISSADKQELDANDGRLASESPRNAFTSRGIPAPSLLSAALQVPPGKVLVPAVIDQTQGQALAALQVLKVIESDAQPGDLCTRREYARWLVSASSALSRNSISKVYPAMYIENVTELAFDDITPEDPDFTCIQGLAEAGLISSKLSKRDMLSSPEEEIGSFFFHPDSPLSRQDLVTWKMALEKRELPEADKKILHLRSGFIDIDKIDPDAWPALMGDLSAGEQGIVALAFGYTRLFQPDKPVTKGQAAIALATGEAADIVSEELARIEAESVAENAVATHNALVAEVEKDINASFEKELLMEREKIEAVQKMAEEARKEVERLRGEREAENAALTKERAAIESEMEVLSRLRHELEEQLQSLMSNKVEISYEKERIESLRKETEEENQAISRLQYELEVERKALSMARAWAEDEAKRVQEHAKALEEARDRWERQGIKVVVDEGLQEEASAGVTWVNVGKKLSVEETVDRAENLTDKLKSMAAEVSGKSKEIINKIVEKMQNLILVLKEWISQAGRQTAEFKDAASAKIGTSVQELQQQAAGFGTTVTEGAKRAVGDCREGVDKLTQRFKT*

Click here to download the sequence:
Link to NCBI Protein BLAST