Transcript Information: R_Transcript_362557.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value2E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3421294819646
Replicate 20.92630737130727
Replicate 32.0211827290723
Condition 2: 8 Hour
Replicate 10.36008624922419
Replicate 20.98650949299348
Replicate 30.53387090059962
Condition 3: 24 Hour
Replicate 10.50642221825818
Replicate 20.81085510627122
Replicate 31.2875120404057


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_362557.p1 GENE.R_Transcript_362557~~R_Transcript_362557.p1 ORF type:3prime_partial len:136 (-),score=11.47 R_Transcript_362557:1-405(-)
ATGTGGATGGATTCTTTGATGAATGATAACATATGCAAGGAGCAATTACGACTTGATAGACATTGTTTTGAGAAGTTGTGTGCCATTTTACAATCCAAAGGGGGGTTGGTGACTTCAAGAAATGTTACGATTAGAGAAATTGTAGCCCTATTTTTACATTGTCTTGCTCATAACTTGAAGAATAGGACTATCAAAGCTATTTTTATTCGCTCAGGAGAGACAATTAGTCGCCAATTTCACACTGTGCTTCAGGCAGTTTTGAAGATTGGTAAATTTTATATGAAGCAAGTTGACTCTACAAATATAGTCCTTGGCTCCCTGCAATTGGTCTATATGCCTGTTCGTGCTTGCTCTCGCAACATAACGCCTTTCAAAAATATCAAGCATTGGACTTGTATAAAAGCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_362557.p1 GENE.R_Transcript_362557~~R_Transcript_362557.p1 ORF type:3prime_partial len:136 (-),score=11.47 R_Transcript_362557:1-405(-)
MWMDSLMNDNICKEQLRLDRHCFEKLCAILQSKGGLVTSRNVTIREIVALFLHCLAHNLKNRTIKAIFIRSGETISRQFHTVLQAVLKIGKFYMKQVDSTNIVLGSLQLVYMPVRACSRNITPFKNIKHWTCIKA

Click here to download the sequence:
Link to NCBI Protein BLAST