Transcript Information: R_Transcript_362558.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value2E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6784331912385
Replicate 21.3273523251683
Replicate 32.3696625099468
Condition 2: 8 Hour
Replicate 14.0809774912075
Replicate 22.827237933943
Replicate 34.1727840506637
Condition 3: 24 Hour
Replicate 12.6388284169775
Replicate 22.6618415902421
Replicate 33.1447851561634


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_362558.p1 GENE.R_Transcript_362558~~R_Transcript_362558.p1 ORF type:5prime_partial len:174 (-),score=22.75 R_Transcript_362558:391-912(-)
GAAATGGAGTTTGTTACCATAGTTGTCGGTTTTATGGTGTTGGTAGTGGCAGCGTGGTATGACCAAAGGTATAGGGTGAATGAGATAACATGGGATGAAGAAGTACGTGCTAGAAAACGTGCCATGTGGATGGATTCTTTGATGAATGATAACATATGCAAGGAGCAATTACGACTTGATAGACATTGTTTTGAGAAGTTGTGTGCCATTTTACAATCCAAAGGGGGGTTGGTGACTTCAAGAAATGTTACGATTAGAGAAATTGTAGCCCTATTTTTACATTGTCTTGCTCACAACTTGAAAAATAGGACTATCAAGGCTATTTTTATTCGCTCAGGAGACACTATTAGTCGCCAATTCCACACTGTGCTTCAAGCAGTTTTGAAGATTGGTAAATTTTATATGAATCAAGTTGACTCTACAACTAGGTTTACAGGTGATAACAGATGGAAATGGTTTGAGGGGGTTGTTGGAGCACTTGATGGCACACATATTCATATGACAGTTCCCATTGGAGATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_362558.p1 GENE.R_Transcript_362558~~R_Transcript_362558.p1 ORF type:5prime_partial len:174 (-),score=22.75 R_Transcript_362558:391-912(-)
EMEFVTIVVGFMVLVVAAWYDQRYRVNEITWDEEVRARKRAMWMDSLMNDNICKEQLRLDRHCFEKLCAILQSKGGLVTSRNVTIREIVALFLHCLAHNLKNRTIKAIFIRSGDTISRQFHTVLQAVLKIGKFYMNQVDSTTRFTGDNRWKWFEGVVGALDGTHIHMTVPIGD*

Click here to download the sequence:
Link to NCBI Protein BLAST