Transcript Information: R_Transcript_36277.p1


Annotated TAIR IDAT5G16000.1
Annotated Gene NameNSP-interacting kinase 1
Annotated Gene Symbol(s)NIK1
Annotation TypeOrtholog
Chromosome Positionchr5:5224264-5227003 | Forward length=638
E-Value4.4E-84
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.1748793673027
Replicate 21.8986016333887
Replicate 33.289797420724
Condition 2: 8 Hour
Replicate 14.9492705744432
Replicate 26.1849247645832
Replicate 38.5930497085875
Condition 3: 24 Hour
Replicate 13.0528998973011
Replicate 22.6982497578898
Replicate 35.5883501328248


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_36277.p1 GENE.R_Transcript_36277~~R_Transcript_36277.p1 ORF type:3prime_partial len:188 (+),score=35.38,LRR_8|PF13855.2|0.00019,LRR_8|PF13855.2|1.1e-07,LRR_8|PF13855.2|1e-08,LRRNT_2|PF08263.8|4.1e-15,LRR_4|PF12799.3|3e-05,LRR_4|PF12799.3|2.6e-05,LRR_1|PF00560.29|3.9e+03,LRR_1|PF00560.29|38,LRR_1|PF00560.29|0.022,LRR_1|PF00560.29|0.68,LRR_1|PF00560.29|12 R_Transcript_36277:251-811(+)
ATGAGAAATACTCACCTGGGTTTTCTACTCACTTTGTTCTGTTTTTACTACACTTCCTCTGCTTGGCTTTCACCTGATGGAGTCAATTATGAAGTTCAAGCATTGATGGCTATCAAAGAGTCACTTAAAGACCCTCATGGTGTTCTTGAGAAATGGGATGCTAATTCTGTGGATCCTTGTAGTTGGGCCATGGTTACTTGCTCTCCTCAAGGCCAAGTTATCAATTTGGGAATTCCAAGCCAGGAGTTGTCTGGGACTTTATCACCAAGTATTGGCAACTTGACAAATCTTCAGAGTGTGCTACTGCAGAACAACAATATATCAGGTCCAATTCCTGCAGAACTAGGAAGATTGTCAAAATTACAAACACTTGATTTGTCCAACAATTTGTTCAGAGGATCAACTCCCAGTTCTCTGTCTCATCTTAACAATCTTCATTACTTACGGTTGAACAATAACAGTCTTTCTGGAGCAATTCCACTGTCAATTGCCAATATGACCCAGCTCACATTCATAGATTTGTCCTACAATGATTTGAGTGGTCCTGTTCCCAGATTCCAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_36277.p1 GENE.R_Transcript_36277~~R_Transcript_36277.p1 ORF type:3prime_partial len:188 (+),score=35.38,LRR_8|PF13855.2|0.00019,LRR_8|PF13855.2|1.1e-07,LRR_8|PF13855.2|1e-08,LRRNT_2|PF08263.8|4.1e-15,LRR_4|PF12799.3|3e-05,LRR_4|PF12799.3|2.6e-05,LRR_1|PF00560.29|3.9e+03,LRR_1|PF00560.29|38,LRR_1|PF00560.29|0.022,LRR_1|PF00560.29|0.68,LRR_1|PF00560.29|12 R_Transcript_36277:251-811(+)
MRNTHLGFLLTLFCFYYTSSAWLSPDGVNYEVQALMAIKESLKDPHGVLEKWDANSVDPCSWAMVTCSPQGQVINLGIPSQELSGTLSPSIGNLTNLQSVLLQNNNISGPIPAELGRLSKLQTLDLSNNLFRGSTPSSLSHLNNLHYLRLNNNSLSGAIPLSIANMTQLTFIDLSYNDLSGPVPRFQ

Click here to download the sequence:
Link to NCBI Protein BLAST