Transcript Information: R_Transcript_363506.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value6E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.53293316656113
Replicate 20.15325766727225
Replicate 30.66880985682197
Condition 2: 8 Hour
Replicate 10.71491576488307
Replicate 20.32643623125818
Replicate 31.3249350817801
Condition 3: 24 Hour
Replicate 10.50272570571615
Replicate 20.1609872911721
Replicate 30.95858560672543


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_363506.p2 GENE.R_Transcript_363506~~R_Transcript_363506.p2 ORF type:complete len:137 (+),score=17.57,UBN2_3|PF14244.2|3.9e-24,Retrotrans_gag|PF03732.13|1.1e-06 R_Transcript_363506:1472-1882(+)
ATGGAGATTGCACTTGCTACGAAGAGAAAGCCGAGATTCATAAAAGGAACCGTTACAAGGAATGATGGTGATCCAGTCAAAGCAGAACGGTGGGATACTTGCAAGAATATGGTAATAGTTTGTTTGCTAAACTCTATGAATGACTCTATTAGACGCCTTGTGCTCTATATTGACTCTGCCTTTGCTATGTGGTTACATCTAGAAAATAGATTTTCTGTTAGTAATGGTTCAAGAAAATATCATATTAACAAGGAAATATATGATCTGAGACATAATGGATCAAGTGTGAATGAATTTCACACTAAGGTGAGATGCTTGTGGGAAGAATTGGACTCTATGAGTAATTTACTTAAGATAACACAGTTTACTGATGAGATTAAGGCTTTCTTGAAAGCTTTGGACAAACAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_363506.p2 GENE.R_Transcript_363506~~R_Transcript_363506.p2 ORF type:complete len:137 (+),score=17.57,UBN2_3|PF14244.2|3.9e-24,Retrotrans_gag|PF03732.13|1.1e-06 R_Transcript_363506:1472-1882(+)
MEIALATKRKPRFIKGTVTRNDGDPVKAERWDTCKNMVIVCLLNSMNDSIRRLVLYIDSAFAMWLHLENRFSVSNGSRKYHINKEIYDLRHNGSSVNEFHTKVRCLWEELDSMSNLLKITQFTDEIKAFLKALDKQ*

Click here to download the sequence:
Link to NCBI Protein BLAST