Transcript Information: R_Transcript_3732.p1


Annotated TAIR IDAT5G55310.1
Annotated Gene NameDNA topoisomerase 1 beta
Annotated Gene Symbol(s)TOP1BETA, TOP1
Annotation TypeOrtholog
Chromosome Positionchr5:22430389-22434590 | Reverse length=917
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 143.541118053548
Replicate 231.505536316325
Replicate 340.806405833906
Condition 2: 8 Hour
Replicate 138.474094024816
Replicate 245.666257107553
Replicate 350.007974771478
Condition 3: 24 Hour
Replicate 148.29139598478
Replicate 236.611263966196
Replicate 340.793874099655


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_3732.p1 GENE.R_Transcript_3732~~R_Transcript_3732.p1 ORF type:complete len:947 (+),score=246.65,Topoisom_I_N|PF02919.11|1.3e+04,Topoisom_I_N|PF02919.11|3.1e-97,Topoisom_I|PF01028.16|2.5e+03,Topoisom_I|PF01028.16|1.6e+04,Topoisom_I|PF01028.16|7.2e-89,Topoisom_I|PF01028.16|5.9e+03,Topo_C_assoc|PF14370.2|4.8e+03,Topo_C_assoc|PF14370.2|6.5e-34 R_Transcript_3732:308-3148(+)
ATGGCGGTGGAAGCTTGTGTGAAAACAAAACTCATAGTTGAGGATAGTGACGATGATGAGCCCATAGTTTTTAGAAGAAGTAAACCGAATTCGTCGAGCTCGGAATTGAAGGGTTCTTCTTCATCATCATCAATTAGGTCTGATAAGCAGTCAGGGAGGCCAAGTTCTGATGTTAGGAACCCGAATTCAAGTGCCCCAAAGGGGAAAATTGTTCAATCTTTGAAGCCCTCATCTTCCAAGTCTTCCTTGGGAACTCAGAAATCGCCTCCCCCGTCCTCTAGACTCCAAAAATCACCCCCACCTGCACAAAAATCACCACAACCTGCACAAAAATCACAACAACCTACACAAAAATCACCAGTTTCGTCGACCAGGCCGTCTCCTTCCCCGCCACCAATGCAAAAGTCGCCACCTTCATCAACCAGACCATCTCCTTCCCCACCGTCATCGAGGGCTTCTCCTTCGATGAATGGGGCATCTTTGGCAAATCATCAGGCTAAGAAGGATAGTAGTGTTCTGGTTAAAGAGGAGAAACGTACGTCTGTTAAGGAGGAGTCAGAGGACTCAGAAGATGATATGCCAATTGGTAGGAGAATTCCAACTGGGTCACAGAAGGGAAATTCCAACAGCGAGGGTAAGCATTCGAATGGCGATGCTAATGGAGAGGATTCTGATGATGATAAGCCGCTCAGCACAAGGATGTCTTCTGGGATGTCTAAAGGTAATTCCAGTGCAGCTGATAAGGAGAGAGCTTCTGGTGGAGCGTTGCAAACTCAGAAATCAAAGGGTCTTAGTGTGAAATCTGAATATCATTCAGATGACGAAAAGCCTTTATCATCAAAAATGCAAAATGGATCTATTAAGAGGGAACATCAAATTAAGAAGGTCCCTGTTACTTCCGCAAAACGGCCTTCAGCTGACTCCAGTTCTGGTCAGAATTCTGTTAAGAAGCCAAAGCTTTCAGAAGCTTCCACCTCAGCTAAAGCTAAGGTAAAAGCAGAGGTCAAGGATGATGATGATCACATCCCCATTGCTCAGCGGATGAATAAAAATGCATCAGGTAGTAAATCAGTGCCTGTGAAGAAGAATGTAGCCAAAGCTGCGTCTTCTAAATTAAAGAAAGTCAACAAGAAATCAAAGAAAATAATGAAGAAATCAAAGTACTCAAGATCGTCGAAAGAGCTACCTAACTCAGGTGATGGGCAGAAATGGACCACCTTAATTCACAGTGGAGTCATCTTCCCGCCTCCCTACAAACCTCATGGGGTTAAGATGCTTTATGATGGTAAACCAGTTGACCTGACTCCGGAGCAGGAAGAGGTTGCAACCATGTATGCGGTGATGCTTGAGACAGATTATGTAAAGAAGGAGAGATTTAATGAGAATTTTTTTAAAGCTTGGAAGGGACTTCTGGGGAAGAACCATGTTATTCAGGACCTTTCAAAGTGTGATTTTACGCCAATTTATGAATGGCATCAGAGGGAGAAGGAGAAAAAGAAGCAAATGAGCACTGAGGAGAAGAAGGCATTGAAAGAAGAGAAAATGAAACAAGAAGAGAAGTATATGTGGGCTATTGTTGACGGTGTCAAAGAAAAGGTGGGGAACTTCAGAGTTGAGCCTCCTGGATTATTCAGGGGTCGTGGCGAGCATCCAAAGATGGGAATGCTCAAAAAGCGTATTTATCCAAGTGACATTACAATAAATATAGGGAAGGGTGCTCCAATTCCAGAATGTCCAATCCCTGGTCAGAGCTGGAAAGAAGTGAGGCACGACAACACTGTCACATGGTTGGCGTTTTGGAATGACCCCATCAACTCAAAAGAGTTCAAGTATGTATTCCTGGCTGCTAGCAGTTCATTAAAGGGCCAAAGTGACAAAGAAAAGTATGAGAAAGCAAGGAAGTTGAAGGATTATATTCAAGGTATTAGAAAAGCATACACCAGGGACTTTACTAGTAAAGATAAGACCAAACAACAAATTGCTGTTGCGACGTATCTCATTGATAGACTTGCACTTAGGGCGGGTAATGAGAAGGATGAAGAAGAAGCAGACACTGTTGGTTGCTGTACATTGAAAGTAGAGAACGTAAAACCAATACCACCAAATATATTAGAGTTTGATTTCCTTGGTAAAGATTCAATCAAGTACTACAAGCAGTTTGAAGCTGAGCCTCTTGTGTACAAAGCTGTTCAACAATTCAGGGATGGGAAGAAAGGTAATGAAGCTCTATTTAGTGAGTTGGACACTAGCAAACTGAATGCACATCTTAAAGAGCTCATGCCTGGTCTTACTGCAAAAGTCTTCCGTACGTTTAATGCATCTTATACATTGGATGACATGTTGGCTAAAGGGGCTGGCAGTGGAGAGGTGGTGGAGAAGATTGCCATTTATCAGCATGCGAACAAGGAGGTTGCAATCATTTGTAATCATCAACGTACGGTTTCTAAGTCTCATACAACTCAGATGGAGAGACTGCAAACAAGAATAGATGAAGCCAAGGCTGAGTTGAGTGACCTGGAGAAGGATTTGGCTCGGGCGAAGAAAGGAAAGCCTCCACTGAAGGATAGTGATGGCAAGCAGAAACGAAATTTGACACCAGAAGTGATTGAGAAGAAGATAGCATCGACAAAGACAAAGATAAATAAATATGAACGTGATATGCACAACAAAGAGGAACTGAAAGAAATTGCGCTGGGCACGTCAAAGATAAATTATCTTGACCCGAGGATCACAGTAGCATGGTGCAAAAGAAACGAAGTTCCCATTGAGAAGATCTTTAACAAGTCCTTGCTGGCGAAATTCTCATGGGCTATGGATGTGGAACCGAGCTTCAGATTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_3732.p1 GENE.R_Transcript_3732~~R_Transcript_3732.p1 ORF type:complete len:947 (+),score=246.65,Topoisom_I_N|PF02919.11|1.3e+04,Topoisom_I_N|PF02919.11|3.1e-97,Topoisom_I|PF01028.16|2.5e+03,Topoisom_I|PF01028.16|1.6e+04,Topoisom_I|PF01028.16|7.2e-89,Topoisom_I|PF01028.16|5.9e+03,Topo_C_assoc|PF14370.2|4.8e+03,Topo_C_assoc|PF14370.2|6.5e-34 R_Transcript_3732:308-3148(+)
MAVEACVKTKLIVEDSDDDEPIVFRRSKPNSSSSELKGSSSSSSIRSDKQSGRPSSDVRNPNSSAPKGKIVQSLKPSSSKSSLGTQKSPPPSSRLQKSPPPAQKSPQPAQKSQQPTQKSPVSSTRPSPSPPPMQKSPPSSTRPSPSPPSSRASPSMNGASLANHQAKKDSSVLVKEEKRTSVKEESEDSEDDMPIGRRIPTGSQKGNSNSEGKHSNGDANGEDSDDDKPLSTRMSSGMSKGNSSAADKERASGGALQTQKSKGLSVKSEYHSDDEKPLSSKMQNGSIKREHQIKKVPVTSAKRPSADSSSGQNSVKKPKLSEASTSAKAKVKAEVKDDDDHIPIAQRMNKNASGSKSVPVKKNVAKAASSKLKKVNKKSKKIMKKSKYSRSSKELPNSGDGQKWTTLIHSGVIFPPPYKPHGVKMLYDGKPVDLTPEQEEVATMYAVMLETDYVKKERFNENFFKAWKGLLGKNHVIQDLSKCDFTPIYEWHQREKEKKKQMSTEEKKALKEEKMKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGMLKKRIYPSDITINIGKGAPIPECPIPGQSWKEVRHDNTVTWLAFWNDPINSKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIQGIRKAYTRDFTSKDKTKQQIAVATYLIDRLALRAGNEKDEEEADTVGCCTLKVENVKPIPPNILEFDFLGKDSIKYYKQFEAEPLVYKAVQQFRDGKKGNEALFSELDTSKLNAHLKELMPGLTAKVFRTFNASYTLDDMLAKGAGSGEVVEKIAIYQHANKEVAIICNHQRTVSKSHTTQMERLQTRIDEAKAELSDLEKDLARAKKGKPPLKDSDGKQKRNLTPEVIEKKIASTKTKINKYERDMHNKEELKEIALGTSKINYLDPRITVAWCKRNEVPIEKIFNKSLLAKFSWAMDVEPSFRF*

Click here to download the sequence:
Link to NCBI Protein BLAST