Transcript Information: R_Transcript_37464.p1


Annotated TAIR IDAT3G46960.1
Annotated Gene NameRNA helicase, ATP-dependent, SK12/DOB1 protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:17291004-17298067 | Reverse length=1347
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.3580978458889
Replicate 24.1930251016958
Replicate 35.6118956248926
Condition 2: 8 Hour
Replicate 15.9442300206007
Replicate 25.7769761549611
Replicate 37.7888871110495
Condition 3: 24 Hour
Replicate 17.4480785141104
Replicate 25.6488970432436
Replicate 38.1246119847429


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_37464.p1 GENE.R_Transcript_37464~~R_Transcript_37464.p1 ORF type:complete len:1347 (+),score=340.52,DSHCT|PF08148.8|2.9e-51,rRNA_proc-arch|PF13234.2|2.1e+03,rRNA_proc-arch|PF13234.2|1.9e-39,DEAD|PF00270.25|2.1e-14,Helicase_C|PF00271.27|7.9e-07 R_Transcript_37464:170-4210(+)
ATGGATCGATTACCAGCAGGAAACGAGTTATCATTTCGGGTCGGGCTAACGGGTCACAGCGGTCATCTCTACGTCGAACCCCTTCCCCCAATCGAAGGCGACGACAATCCTCTTCGTGACCTCCCGGATTTTGTTCTCCCACCTGCCTTTCCGAGGGAGACTAGAGAATCTATCATAGAATATATAGAAGAAAAGTATCTTACTCCTAAATTGGACCCTGATGAGTTCTCTGTTGAGAAGGCTGGAAGGGACTGGGATTTTGACTGGTTTGGCAAGGCCAAAATACCCATTGATCCATCATTACCTCGATCAGCTGTGGTTCCTGCTTGGGAATTACCATTTAGGCGTTCACATGGACAAGAGGATGCAATCTGGGAGCCCCAATCCGTGGAGGTAGAGATGTCAGAATTAACTGCCGGAGCAGAGGAATCTGGTGCTTTGCCGCGAATTACTGGACCTTCAAAGGATTTTGTCAGGGGGAGCATTAACAATCGGCCTTTTCGTCCAGGAGGTTTAGATGGATCTCAGTCTTTACCCAAGGTTGTTCCTGAGGGTGCTTTGAATGGTCAATGGATACACGAGGTTCTTAATGGTGGTCCTGCTGAAAAAATTCCTCCCAGCTTTAAGCAAGGATTGGATCTTGGTGATCTCAAGGCATTTCCTTGTTCGTGGAATGTTGCTAAGGGCCAAGTTTCTTCAACAGGTATATTGGATGAAGAGAAGAGCAAATTGTCTTTGCAGTTTGATGATTTGTTCAAGAGAGCATGGGAAGATGATTTTGCTGCAAGGGATGAGGCTGGCGAACATAAATCAGAAGTAGAGAACATTGAATCAGAAATCGAAGTGGTTAATGCTGAAGCCAACAAGGATATTCCAAATGTTAGATCATCTGAAATTGATGAAATTTTGTCAGTTGATTCAGTAGAACCAGAGTTGAAGATGGATGGAAAGAATGAGGAAGGTGGGAAGCAGCAAAAAGAGTCTTGGGCTATCCGTGGAGTTAATGAGCGTATTGCAGACCGTTTTTATGAACTTGTTCCTGACTTGGCACTAGAGTTTCCATTTGAATTGGATTCATTCCAAAAGGAGGCTATCTATTATCTTGAACAAGGGGAGTCTGTTTTTGTGGCAGCTCATACATCAGCTGGAAAGACAGTTGTTGCGGAGTACGCATTTGCATTGGCTTCAAAACATTGCACCAGAGCTGTATATACAGCTCCAATAAAGACAATCAGCAACCAAAAATACAGAGATTTCTCTGGGAAATTTGACGTGGGTCTTCTAACTGGCGATATCAGCTTGAGGCCAGAGGCGTCTTGTCTCATCATGACTACTGAGATATTGAGGTCAATGCTGTACAGAGGTGCTGATATTATACGTGACATTGAATGGGTCATCTTTGACGAAGTGCACTATGTTAATGATGCTGAAAGAGGTGTTGTTTGGGAGGAAGTTATTATAATGCTTCCACGTCACATCAATTTTGTTCTTCTTTCTGCCACAGTTCCAAATACAATAGAATTTGCTGACTGGATAGGTAGGACAAAGCAAAAGACTATTCGTGTTACTGGGACCACCAAAAGACCTGTCCCCTTGGAGCACTGCCTGTTTTACTCTGGAGAACTTTATAGGATTTGTGAGAATGAAATTTTTATACCTCAGGGTCTGAAAGCTGCTAAAGAAGCATACAAGAAAAAGAATTCCAGTACAGTCAGAAGTGGCCCTGCAATGGGTTCTGGTGGAGCTCATGCTCAAAATCGTGAACAAGCTCATCGTGGAAAACAGAAGCATCCTGTGTCCCATCATTCTGGAAATTTAAATGCGAATGCTTCGGGGAACTTTATGAATGGAAACCAGAATAATTTCAGCTTGAGACGATCTGATGCTTCTTTGTGGTTGCAATTAGTGAACAAACTGTCAAAAAAATCACTTTTGCCTGTTATCGTATTTTGTTTTTCAAAGAATCGTTGTGATCGATCAGCTGATAGTATGACAAGTATGGACCTTACAAGTAATTCAGAGAAGAGTGAAATTCGTGTTTTCTGTGACAAAGCATTTTCACGTCTGAAGGGGTCTGATCGAAATCTACCTCAGATTCTTAGAGTTCAAAGTCTTCTTCGTAGAGGAATTGTTGTACATCACGCTGGCTTGCTCCCGATAGTGAAAGAAGTGATTGAAATGCTTTTCTGCCGTGGTGTAATCAAGGTGCTGTTTTCTACTGAGACATTTGCTATGGGGGTCAATGCTCCTGCCAGAACGGTGGTTTTTGATACTTTAAGAAAATTCGATGGGAAGGAATTCAGGCAGATAATTCCTGGAGAATATACTCAAATGGCTGGTCGTGCTGGCAGAAGAGGGCTTGATAAATTTGGCACTGTTATTATAATATGCCGTGATGAAATTCCTGAAGAAAGAGATATGAAACATGTCATCATTGGACATCCCACGAGACTTGAATCCCAGTTCCGGCTAACATATATTATGATTCTGCATCTACTTCGTGTTGAAGAATTGAAGGTGGAAGATATGCTAAAGAGAAGTTTTGCTGAATTTCATGCCCAGAAGAAACTTCCTGAAAAGCAACAACTTCTGATGCGAAAGCTTGCACAGCCTACGAAAACGATAGATTGCATAAAGGGGGAGCCGTCAATTGAGGAATACTATGAAATGCATGTAGAGGCTGAGGAATATTTGAACAAAATAACGGAGGGCATCATGCAATCTCATGCTGGGCAGCAATTCCTGGTGCCTGGGAGAGTGGTGGTTGTTAAATCTCAGTCGTCTCAGGACCATTTACTTGGTGTGGTAGTGAAAGCACCTTCAGCAAACATAAAAAAGTACATAATTTTGGTGGTGAAACCTGATTTACCTCCAGTACTGCAATCATCCTCAGGCAGTGGTGCAATCCTTGAAAAAGGGTCTAAGAAATCTGAAGAAGGCTTTTTTGTACTGCCCAAGGGGAAACGTGCATCAGATGATGAATATTATTCCGCTGTCACTGCTCGCAAGGGTTCTGGTGTAATCAACATAAAATTGCCTTACAGTGGGGTGGCTTCTGGTGCTAGCTATGAGGTCAGAGAAGTGGATAATAAAGAGTTCCTTTGCATCTGCAATTGCAAAATAAAGATTGATCAAGTTCGGCTTCTTGAAGATGTCAGCACTGCTGCCTATTCAAAAACAGTTCTGCAGCTTTTGGATCTGAAGTCCAAGGGAAATAAATATCCCCCAGCTTTGGATCCTTTGAAGGATCTGAAGCTGAAGGATGTCAATCTTGTGGAAGCTTACAACAAATGGAACTCATTGTTGGGAAAGATGGCAGATAACAAGTGTCATGGATGTATAAAGTTGGATGAACATATGAAGTTAGTCAAAGAAATTTTCAAGCATAGAGCAGAAGTCAATGAATTGAGGTTTGAAATGTCTGATGAAGCACTACAACAGATGCCGGACTTTCAGGGCCGGATAGATGTTCTCAAGGCAATTGGCTGTTTAGACGATGACCTTGTTGTTCAAATAAAAGGACGTGTAGCTTGTGAAATGAATTCTGGAGAAGAGCTGATATGCACTGAGTGTTTGTTTGAGAACCAATTAGAGGACCTGGAACCAGAAGAAACAGTTGCACTAATGTCTGCTTTTGTATTTCAGCAGAAGAATACCTCAAATCCTTCTCTTACTCCGAAGTTATCTGGGGCTGTACAGAGATTATATGATACAGCCATCAGACTTGGGCAGCTGCAGGCAGAGTTTAAGCTCCCAATAAGTCCTGAGGAGTATGCTCAAGAAAATCTCAAGTTTGGTCTTGTAGAAGTGGTTTATGAATGGGCAAAGGGCACAGAATTTGCTGATATTTGTGAGCTAACTGATGTTCCGGAAGGTTTGATAGTGAGGACCATTGTCCGTCTTGATGAAACGTGTCGAGAATTTAAAAATGCTGCAGCTATTATGGGAAACTCAGCACTGTACAAGAAGATGGAAGCTGCTTCAAATGCTATAAAACGTGATATTGTTTTTGCAGCAAGCTTGTACATCACAGGTGTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_37464.p1 GENE.R_Transcript_37464~~R_Transcript_37464.p1 ORF type:complete len:1347 (+),score=340.52,DSHCT|PF08148.8|2.9e-51,rRNA_proc-arch|PF13234.2|2.1e+03,rRNA_proc-arch|PF13234.2|1.9e-39,DEAD|PF00270.25|2.1e-14,Helicase_C|PF00271.27|7.9e-07 R_Transcript_37464:170-4210(+)
MDRLPAGNELSFRVGLTGHSGHLYVEPLPPIEGDDNPLRDLPDFVLPPAFPRETRESIIEYIEEKYLTPKLDPDEFSVEKAGRDWDFDWFGKAKIPIDPSLPRSAVVPAWELPFRRSHGQEDAIWEPQSVEVEMSELTAGAEESGALPRITGPSKDFVRGSINNRPFRPGGLDGSQSLPKVVPEGALNGQWIHEVLNGGPAEKIPPSFKQGLDLGDLKAFPCSWNVAKGQVSSTGILDEEKSKLSLQFDDLFKRAWEDDFAARDEAGEHKSEVENIESEIEVVNAEANKDIPNVRSSEIDEILSVDSVEPELKMDGKNEEGGKQQKESWAIRGVNERIADRFYELVPDLALEFPFELDSFQKEAIYYLEQGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDISLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDAERGVVWEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKQKTIRVTGTTKRPVPLEHCLFYSGELYRICENEIFIPQGLKAAKEAYKKKNSSTVRSGPAMGSGGAHAQNREQAHRGKQKHPVSHHSGNLNANASGNFMNGNQNNFSLRRSDASLWLQLVNKLSKKSLLPVIVFCFSKNRCDRSADSMTSMDLTSNSEKSEIRVFCDKAFSRLKGSDRNLPQILRVQSLLRRGIVVHHAGLLPIVKEVIEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQIIPGEYTQMAGRAGRRGLDKFGTVIIICRDEIPEERDMKHVIIGHPTRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEKQQLLMRKLAQPTKTIDCIKGEPSIEEYYEMHVEAEEYLNKITEGIMQSHAGQQFLVPGRVVVVKSQSSQDHLLGVVVKAPSANIKKYIILVVKPDLPPVLQSSSGSGAILEKGSKKSEEGFFVLPKGKRASDDEYYSAVTARKGSGVINIKLPYSGVASGASYEVREVDNKEFLCICNCKIKIDQVRLLEDVSTAAYSKTVLQLLDLKSKGNKYPPALDPLKDLKLKDVNLVEAYNKWNSLLGKMADNKCHGCIKLDEHMKLVKEIFKHRAEVNELRFEMSDEALQQMPDFQGRIDVLKAIGCLDDDLVVQIKGRVACEMNSGEELICTECLFENQLEDLEPEETVALMSAFVFQQKNTSNPSLTPKLSGAVQRLYDTAIRLGQLQAEFKLPISPEEYAQENLKFGLVEVVYEWAKGTEFADICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALYKKMEAASNAIKRDIVFAASLYITGV*

Click here to download the sequence:
Link to NCBI Protein BLAST