Transcript Information: R_Transcript_374840.p2


Annotated TAIR IDAT2G27600.1
Annotated Gene NameAAA-type ATPase family protein
Annotated Gene Symbol(s)SKD1, VPS4, ATSKD1
Annotation TypeOrtholog
Chromosome Positionchr2:11781226-11783730 | Forward length=435
E-Value3.4E-65
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3933557980701
Replicate 20.32055420482898
Replicate 30.34972118467408
Condition 2: 8 Hour
Replicate 10.37382999919458
Replicate 20.34138750902573
Replicate 30.5542476525309
Condition 3: 24 Hour
Replicate 11.5772539316743
Replicate 20.67344301955961
Replicate 31.1695720061701


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_374840.p2 GENE.R_Transcript_374840~~R_Transcript_374840.p2 ORF type:internal len:131 (+),score=39.15,MIT|PF04212.14|4.1e-12,MIT|PF04212.14|1.7e+03 R_Transcript_374840:3-392(+)
TCGGGGAACTACGCAAAAGCTTTCCCTCTTTACATGAACGCCTTGGAGTACTTCAAGACTCATCTTAGGTTCGAGAAGAACCCCAATATTCGCGAAGCCATCACTCAGAAATTCACCGAGTATCTCCGCCGTGCTGGGGAGATTCGCGCTGTTCTTGATGACGGCGGCGGCTCTGGTCGGGCATCCTATGGTGCTGATGCTGCCGTCGCTGCTTGGCCGATGGATGGGAAGGATGGTGGTGAGGGAGAAGATGCTGAGCAATCGAAGTTGAGAGCTAGATTGAATTCTGCTATTATTAGGGAAAAGCCGAATGTTAAGTGGAATGATGTGGCGGGTTTGGAGAGGGCTAAACAGGCCTTGCAAGAGGCTGTTATCCTGCCTGTGAAGTTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_374840.p2 GENE.R_Transcript_374840~~R_Transcript_374840.p2 ORF type:internal len:131 (+),score=39.15,MIT|PF04212.14|4.1e-12,MIT|PF04212.14|1.7e+03 R_Transcript_374840:3-392(+)
SGNYAKAFPLYMNALEYFKTHLRFEKNPNIREAITQKFTEYLRRAGEIRAVLDDGGGSGRASYGADAAVAAWPMDGKDGGEGEDAEQSKLRARLNSAIIREKPNVKWNDVAGLERAKQALQEAVILPVKF

Click here to download the sequence:
Link to NCBI Protein BLAST