Transcript Information: R_Transcript_375272.p2


Annotated TAIR IDAT4G10340.1
Annotated Gene Namelight harvesting complex of photosystem II 5
Annotated Gene Symbol(s)LHCB5
Annotation TypeOrtholog
Chromosome Positionchr4:6408200-6409496 | Forward length=280
E-Value3.6E-104
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.22959699314112
Replicate 20
Replicate 30.14406753205127
Condition 2: 8 Hour
Replicate 10.1539991506116
Replicate 20.56253790795435
Replicate 30.11416107308419
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.13765852004338


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_375272.p2 GENE.R_Transcript_375272~~R_Transcript_375272.p2 ORF type:5prime_partial len:159 (+),score=-0.04,Chloroa_b-bind|PF00504.17|1.5e-23 R_Transcript_375272:1-477(+)
CTCGGCGCCGCCGGGTTCATCATCCCCGAGGCCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGCATCCCCATCAACCTCATCGTCGCCGTCGCCGCCGAGGTCGTCCTCGTCGGCGGCGCCGAGTACTACCGGATCATCAACGGCCTGGATCTGGAGGACAAGCTCCACCCAGGTGGCCCATTCGACCCGCTGGGGCTGGCGAGCGACCCGGACCAGGCGGCGCTGCTGAAGGTGAAGGAGATCAAGAACGGGCGGCTGGCCATGTTCTCCATGCTGGGGTTCTTCATCCAGGCCTACGTCACCGGCGAGGGCCCCGTCGAGAACCTCTCCAAGCACCTCAGCGACCCCTTCGGCAACAACCTGCTCACCGTCATCTCCGGCGCCGCCGAGAGGACGCCCAGCCTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_375272.p2 GENE.R_Transcript_375272~~R_Transcript_375272.p2 ORF type:5prime_partial len:159 (+),score=-0.04,Chloroa_b-bind|PF00504.17|1.5e-23 R_Transcript_375272:1-477(+)
LGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL*

Click here to download the sequence:
Link to NCBI Protein BLAST