Transcript Information: R_Transcript_37796.p1


Annotated TAIR IDAT5G46560.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Inner nuclear membrane protein MAN1 (InterPro:IPR018996); Has 58 Blast hits to 58 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:18888061-18890090 | Forward length=387
E-Value7E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5981855213809
Replicate 21.2578428820824
Replicate 31.3722930357142
Condition 2: 8 Hour
Replicate 11.1283808731449
Replicate 21.442637538141
Replicate 32.5930872314839
Condition 3: 24 Hour
Replicate 12.9622977068005
Replicate 21.1180085151905
Replicate 31.7147049754712


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_37796.p1 GENE.R_Transcript_37796~~R_Transcript_37796.p1 ORF type:5prime_partial len:217 (+),score=32.33 R_Transcript_37796:1-651(+)
CTCCCTTTCTCCTTCCCTCCTTCAAAAACCAAAAATAGTGAGAATAGAAACAGTACAGACATGATGAGACCATCTCCATATTCAACACCAAAAAGACGCCCAAAATCAGAACCCAAAACCCCAGATACTAATTCAAAACCCTACAATTACAATAGAGATCAATCTCCATCTCCTTCAACTTCATCGACGGTGACATCAATATTTGAAAAAGTAGAACCACCCCCTAATTTTTTACCCTCCTCACAATCCGAATTTCTCAAGCTTCTTCTCGTACTCGCTATTGCTGCTCTTGTTGCTGCCACCTGTCATTTTCTTGTCGGTATTTTTCATCGCCCAACTTTACCCTTTTGTGACAACATCGGCAATCTCGATTCCGGCGATGCCCTTCTTTCGGCAGAATCCTGTGAGCCTTGTCCAAGTAATGGGAGATGTTATAAGGGCCAGTTGGAGTGCATTCAAGGATATAGAAAGTATGGCAAGATGTGCATTGAAGATGGAGATATCAGCGAAACAGCAAATAAACTTGCAGAATGGGCAAAAGATCATCTATGTGAAGCACATGCACAACACATTTGTCATGGAACTGGAACAATTTGGTTTTGTCACTTGACTGCTGTCACAATTTCAGACTTTGTTCACATGACACCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_37796.p1 GENE.R_Transcript_37796~~R_Transcript_37796.p1 ORF type:5prime_partial len:217 (+),score=32.33 R_Transcript_37796:1-651(+)
LPFSFPPSKTKNSENRNSTDMMRPSPYSTPKRRPKSEPKTPDTNSKPYNYNRDQSPSPSTSSTVTSIFEKVEPPPNFLPSSQSEFLKLLLVLAIAALVAATCHFLVGIFHRPTLPFCDNIGNLDSGDALLSAESCEPCPSNGRCYKGQLECIQGYRKYGKMCIEDGDISETANKLAEWAKDHLCEAHAQHICHGTGTIWFCHLTAVTISDFVHMTP*

Click here to download the sequence:
Link to NCBI Protein BLAST