Transcript Information: R_Transcript_37797.p1


Annotated TAIR IDAT5G46560.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Inner nuclear membrane protein MAN1 (InterPro:IPR018996); Has 58 Blast hits to 58 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:18888061-18890090 | Forward length=387
E-Value2.1E-99
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5171292222104
Replicate 20.81803767855707
Replicate 31.3089564340658
Condition 2: 8 Hour
Replicate 11.2719929842725
Replicate 21.2777646766392
Replicate 31.3201171360281
Condition 3: 24 Hour
Replicate 11.1926133624781
Replicate 20.63015025401649
Replicate 31.6486842491429


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_37797.p1 GENE.R_Transcript_37797~~R_Transcript_37797.p1 ORF type:5prime_partial len:385 (+),score=58.67,MSC|PF09402.6|4.5e-18 R_Transcript_37797:2-1156(+)
CTTCCCTCGTTCAAAAACCAAAATATTGAGAATAATAACAGTAGAGACATGATGAGACCATCTCTATATTCAACATCAAAAAGACGCCCAAAATCAGAAACCAAAACCCCAAATACTAATTCAAAACCCTACAATTACAATAGAGATCAATCTCCATCTCCTTCAACTTCATCGACGGTGACATCAATATTTGAAAAAGTAGAACCACCCCCTAATTTTTTACCCTCCTCACAATCCGAATTTCTCAAGCTTCTTCTCGTACTCGCTATTGCTGCTCTTGTTGCTGCCACCTGTCATTTTCTTGTCGGTATTTTTCATCGCCCAACTTTACCCTTTTGTGACAACATCGGCAATCTCGATTCCGGCGATGCCCTTCTTTCCGAATCCTGTGGGCCTTGTCCAAGCAATGGGAGGTGTTATAAGGGCCAGTTGGAGTGCATTCAAGGATATAGAAAGTATGGCAAGATGTGCATTGAAGATGGAGATATCAGCGAAACAGCAAATAAACTTGCAGAATGGGCAAAAGATCATCTATGTGAAGCACATGCACAACACATTTGTCATGGAACTGGAACAATTTGGGTATCTGAGGATGATTTGAGTAATATGTTGGAGAACAATGGGTTAGTTCAGAGTTCAACTTTGGATGATGTGAAAATTATGTATGTCAAAGAAAGAGCAAGGCAATACCTTGACAAATTGCTCGATATAAGGACAACTAATGATGGGATCAAAGAGTTCAAGTGTCCTGAAATTCTAGCTGACAGTTACAAATCAGTGACCTGTCGTGGCCGACAATGGATAGCCAAACATATTGTCTTCCTCATACCAATTTGTGCTGTGCTTGCAGGATTAACATTGCTGGTGTTCAGAATTCGTAGAAGATGGTATTTGACAAATAGAGGAGAACAGCTTTACCATCAGGTTTGTGACATACTCGAAGAGAATGCTTTGATGTCTAAAAGCACGATGGACAGAGAACCTTGGTTAGTTGCCTCTAGGCTACGAGATCACCTACTTTCGCCTATTGAACGGAAGGATTCTTGTCTGTGGAAGATGGTTGAGGAGTTGGTTGAGTTAGATTCTCGCTTGGATCGCTATCCGAAGCTTGTCAAGGGTGAATCAAAGGTGGTTTGGGAATGGCAAGGTACATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_37797.p1 GENE.R_Transcript_37797~~R_Transcript_37797.p1 ORF type:5prime_partial len:385 (+),score=58.67,MSC|PF09402.6|4.5e-18 R_Transcript_37797:2-1156(+)
LPSFKNQNIENNNSRDMMRPSLYSTSKRRPKSETKTPNTNSKPYNYNRDQSPSPSTSSTVTSIFEKVEPPPNFLPSSQSEFLKLLLVLAIAALVAATCHFLVGIFHRPTLPFCDNIGNLDSGDALLSESCGPCPSNGRCYKGQLECIQGYRKYGKMCIEDGDISETANKLAEWAKDHLCEAHAQHICHGTGTIWVSEDDLSNMLENNGLVQSSTLDDVKIMYVKERARQYLDKLLDIRTTNDGIKEFKCPEILADSYKSVTCRGRQWIAKHIVFLIPICAVLAGLTLLVFRIRRRWYLTNRGEQLYHQVCDILEENALMSKSTMDREPWLVASRLRDHLLSPIERKDSCLWKMVEELVELDSRLDRYPKLVKGESKVVWEWQGT*

Click here to download the sequence:
Link to NCBI Protein BLAST