Transcript Information: R_Transcript_378920.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value7E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.2031664356434
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_378920.p1 GENE.R_Transcript_378920~~R_Transcript_378920.p1 ORF type:internal len:113 (-),score=13.35,UBN2_3|PF14244.2|4.7e-10,Retrotrans_gag|PF03732.13|6.8e-06 R_Transcript_378920:3-338(-)
ATAAAGTACTATTTGTTAGGACAAGATTTATGGAGCATAGTTGGTGGAGAAGATACAACACCACCAAGTGATGATACGGAGAAAAAACAAGGGAAGATTAAGACTGGAAAGGTTATGTACATATTGTCTGTCACAGTGGAGGACGAGTACCTAGAGCGAATAAAAGATTTGCAAACCCCGAAGGAAGCGTGGGATACCTCAGAAGCATTATTTACAAAGAAGAATTATGCTAAATTGCAACAGCTAGAAAACGAACTTATGACCGTCAAACAAGGAGACATGAAGATAAGTCAATATTTCACTAAAGTTAAAAATCTATATGTGGCGAAATTCCTA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_378920.p1 GENE.R_Transcript_378920~~R_Transcript_378920.p1 ORF type:internal len:113 (-),score=13.35,UBN2_3|PF14244.2|4.7e-10,Retrotrans_gag|PF03732.13|6.8e-06 R_Transcript_378920:3-338(-)
IKYYLLGQDLWSIVGGEDTTPPSDDTEKKQGKIKTGKVMYILSVTVEDEYLERIKDLQTPKEAWDTSEALFTKKNYAKLQQLENELMTVKQGDMKISQYFTKVKNLYVAKFL

Click here to download the sequence:
Link to NCBI Protein BLAST