Transcript Information: R_Transcript_379197.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value5E-69
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0113777837707
Replicate 20.55399209541684
Replicate 31.0274789950781
Condition 2: 8 Hour
Replicate 10.90449105346025
Replicate 20.29499844117659
Replicate 30.38314745372849
Condition 3: 24 Hour
Replicate 10.12114937851031
Replicate 20.11638659045159
Replicate 30.17325359910473


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_379197.p1 GENE.R_Transcript_379197~~R_Transcript_379197.p1 ORF type:complete len:379 (+),score=24.80,LRR_8|PF13855.2|1.3e+03,LRR_8|PF13855.2|0.0041,LRR_8|PF13855.2|3e-06,LRR_8|PF13855.2|4.8e-08,LRR_8|PF13855.2|0.01,LRR_8|PF13855.2|0.00011,LRR_8|PF13855.2|0.18,LRR_8|PF13855.2|0.11,LRR_8|PF13855.2|0.22,LRR_4|PF12799.3|1.5e+03,LRR_4|PF12799.3|3.1,LRR_4|PF12799.3|0.0056,LRR_4|PF12799.3|0.00079,LRR_4|PF12799.3|0.015,LRR_4|PF12799.3|0.11,LRR_4|PF12799.3|1.5,LRR_4|PF12799.3|0.088,LRR_4|PF12799.3|0.42,LRRNT_2|PF08263.8|1.2e-09,LRR_1|PF00560.29|7.6e+03,LRR_1|PF00560.29|1.7e+02,LRR_1|PF00560.29|10,LRR_1|PF00560.29|0.24,LRR_1|PF00560.29|3.8e+02,LRR_1|PF00560.29|8.9,LRR_1|PF00560.29|2.6,LRR_1|PF00560.29|24,LRR_1|PF00560.29|22,LRR_1|PF00560.29|1.2e+02 R_Transcript_379197:94-1230(+)
ATGCAAGGCAGTCGTCCTCAGATCTATTTTTATATTCTCATGCTATTTTTCACCTTATCATCAGCTCAAAAATGCAACCCAAATGATGAAAAAGTGCTACTCAAGATAAAAGCTCACTTCAACAACGCCTTAGTTTTCACCACTTGGGATCCAAACACTACTGATTGCTGCACCTGGGGTGGTATCGAATGCAATTCTAACGGTGACGTCACCATGATCGCTATAGGCATTACTACTGACGTCAGCCGCCAAATCCCACCTGTAATTGGAGAGCTCTCCCACCTTCAATACCTCCTCTTGGAAGTCACTCCTGGGCTTACCGGCCCAATCCCTCCGGCTATCGCCAAATTGACCAAACTCCAACACCTTCTTTTGAACATAAATAACCTCACGGGCCCAATCCCTGAATTCCTGGCCCAACTTACGGATCTTGAGGAAATTGATCTCAGCTCAAATAGCTTCACCGGTCCACTCCCCTTAAGATTGGACCGGCTTACCAAGCTTAAAACTCTTAATCTCGGTTCAAACAAATTATCCGGTCCAATTCCCGACTCCTTGAGCCGGATTAAGAGCCTCGACCAGCTCCACCTCTACGAAAATCGTTTATCAGGCCCAATCCCGGCTTCTTTGTCTCAACTCCCTAGGCTCAACAAGCTTGACCTCCACCAAAACCAGCTCACCGGCTCAATCCCAACAAACTTCGGCTCGTTTCGAAACCCGGCCTTGAACCTTGACCTTTCCTTCAACAATCTTTCCGGTCCCATCCCCAGATCCTTCGGCAAAGCCCGGCTAACTCAATTGGATCTTTCTAACAACAAATTCACAGGTGATGCCTCGTTTTTGTTCGGAAGAGACAAAAGAGTGTTGAACACCATTGATTTGAGCAACAATCTTTTTAAGTTTGACTTCTCCAACGTTGACCTGCCCCCGAGCTTGAAGAATCTTGACATAAGCCACAACATGATATATGGGTCACTTCCAAGAACACTGGGCCAGCTTCCATTGATCTCCATTGATGTGAGCTTCAACCAGCTTTGTGGCCCAATCCCAACTGGCCGACGGTTGAAACAGTTCAAGCCCTCCAAGTTTTCCAATAATAAGTGTTTGTGCGGTCCACCTTTGCCAGCATGTAGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_379197.p1 GENE.R_Transcript_379197~~R_Transcript_379197.p1 ORF type:complete len:379 (+),score=24.80,LRR_8|PF13855.2|1.3e+03,LRR_8|PF13855.2|0.0041,LRR_8|PF13855.2|3e-06,LRR_8|PF13855.2|4.8e-08,LRR_8|PF13855.2|0.01,LRR_8|PF13855.2|0.00011,LRR_8|PF13855.2|0.18,LRR_8|PF13855.2|0.11,LRR_8|PF13855.2|0.22,LRR_4|PF12799.3|1.5e+03,LRR_4|PF12799.3|3.1,LRR_4|PF12799.3|0.0056,LRR_4|PF12799.3|0.00079,LRR_4|PF12799.3|0.015,LRR_4|PF12799.3|0.11,LRR_4|PF12799.3|1.5,LRR_4|PF12799.3|0.088,LRR_4|PF12799.3|0.42,LRRNT_2|PF08263.8|1.2e-09,LRR_1|PF00560.29|7.6e+03,LRR_1|PF00560.29|1.7e+02,LRR_1|PF00560.29|10,LRR_1|PF00560.29|0.24,LRR_1|PF00560.29|3.8e+02,LRR_1|PF00560.29|8.9,LRR_1|PF00560.29|2.6,LRR_1|PF00560.29|24,LRR_1|PF00560.29|22,LRR_1|PF00560.29|1.2e+02 R_Transcript_379197:94-1230(+)
MQGSRPQIYFYILMLFFTLSSAQKCNPNDEKVLLKIKAHFNNALVFTTWDPNTTDCCTWGGIECNSNGDVTMIAIGITTDVSRQIPPVIGELSHLQYLLLEVTPGLTGPIPPAIAKLTKLQHLLLNINNLTGPIPEFLAQLTDLEEIDLSSNSFTGPLPLRLDRLTKLKTLNLGSNKLSGPIPDSLSRIKSLDQLHLYENRLSGPIPASLSQLPRLNKLDLHQNQLTGSIPTNFGSFRNPALNLDLSFNNLSGPIPRSFGKARLTQLDLSNNKFTGDASFLFGRDKRVLNTIDLSNNLFKFDFSNVDLPPSLKNLDISHNMIYGSLPRTLGQLPLISIDVSFNQLCGPIPTGRRLKQFKPSKFSNNKCLCGPPLPACS*

Click here to download the sequence:
Link to NCBI Protein BLAST