Transcript Information: R_Transcript_37972.p1


Annotated TAIR IDAT3G61490.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:22758439-22760137 | Forward length=476
E-Value4.7E-252
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 149.591075406922
Replicate 234.600074007257
Replicate 340.408981748566
Condition 2: 8 Hour
Replicate 125.596838855922
Replicate 234.535590647639
Replicate 340.486986302097
Condition 3: 24 Hour
Replicate 170.081727326676
Replicate 261.162315035938
Replicate 374.918713320305


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_37972.p1 GENE.R_Transcript_37972~~R_Transcript_37972.p1 ORF type:5prime_partial len:551 (+),score=44.72,Glyco_hydro_28|PF00295.13|2.7e-36,Pectate_lyase_3|PF12708.3|5.1e-12,Pectate_lyase_3|PF12708.3|3.3e+02,Pectate_lyase_3|PF12708.3|7.2e+02 R_Transcript_37972:1-1653(+)
CGAGGTTTCAAACCCCCCCCCCCCTTTTTTTTTTTAAAATTTTTTTTTTTTTTTTGTTTATTTAAAAAAAAAAAAAAAAAAAAAAATTGGACTTATATAGTAGCACTAGATCAATCTGTAAAGATACCATCAAATTATTCTTTTGCATTTATCAAACTCAAATTCCAATTCCCAATCCAACATTCTCAAAACAAAGCCTTTTATTTTATTTTTTTTCAGTTCTCTTTCAAATTTTCTAAAATGTTTAAAGAGTTCTTAGTTTTGGTTTTTCTAGTATTAGTAATGAAAACAAAAGATTTAGAGGGAAGGAAATACAGAGTGTTAGATTATTTTGAGTACTCTGCCGTGAACTGCAGGGCTCACAGTGCTTCAATAACTGATTTTGGAGGCGTTGGTGATGGAATAAGCTCCAATACAAAGGCGTTCCAGACAGCCGTTGATCATCTCAAGCAGTTTGAATCGGATGGTGGATCTTTGCTCTTTGTTCCTCCTGGGAAATGGTTAACAGGGAGCTTCAATCTCACTAGCCATTTTACTCTTTACCTTCACAAGGATGCTTTTCTCTTGGCTGCCCAGGACATAAACGAATGGCCGGTGATCGAGCCCCTGCCTTCGTATGGCCGAGGAAGGGATGCTCCGGGTGGAAGATACTCAAGTCTAATCTTTGGTACTAACCTCACAGATGTCATAATCACAGGGGCCAATGGAACTATTGATGGGCAAGGAGAACTATGGTGGCAAAAGTTCCACAAGGGCCAGCTCAAGTACACGAGGCCTTACCTAATTGAGCTTATGTATTCCGATGGCATCCAAATCTCGAACCTCACATTGATCAACTCTCCTTCATGGAATGTTCATCCCATTTACAGCAGCAATATTCTAGTTCAAGGTATCACTATCACTGCACCTGTGAACTCTCCGAACACTGATGGGATAAACCCAGATTCCTGCACAAACACAAGAATTGAGGACTGCTATATCGTGTCAGGGGACGACTGTGTTGCTGTCAAAAGTGGGTGGGATGAGTATGGCATCGCCTTCGGGATGCCCACCAAGCAGCTAGTTATCCGACGTCTGACATGCATTTCTCCAACAAGTGCTGTAATCGCGTTGGGAAGTGAGATGTCGGGTGGTATCCAAGATGTTAGGGCAGAGGACATTTTGGCAATCAACTCTGAATCAGGAGTCAGGATCAAAACTGGAGCAGGCAGGGGAGGTTTTGTGAAGGACATATACGTGAAAGGAATGACAATGCATACAATGAAATGGGCTTTTTGGATGACAGGGAATTATGGGTCACATCCTGACGACAAGTATGATCCTAATGCTCTTCCTACCATACAGAACATTAACTACAGAGATATGGTAGCTGAGGATGTGACGATGGCAGCTCGGTTAGAAGGAATTTCTGGGGATCCATTCACTGAAATCTGCATATCAAATGTGACTATTTCAATGGCTGCCAAACCCAAGAAAATTCAGTGGGCTTGCACTGATGTCGCCGGGATTTCAAGCCAGGTTACCCCTAGCCCTTGCAATTTGTTGGCTGATCAAGGGCCAGAGCACGCGACAATATGTCAGTTCCCCACAGATCCCCTGCCAATCGAAAATATACAAATCCAAACATGTTCTTACAACAGAAGGTATCTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_37972.p1 GENE.R_Transcript_37972~~R_Transcript_37972.p1 ORF type:5prime_partial len:551 (+),score=44.72,Glyco_hydro_28|PF00295.13|2.7e-36,Pectate_lyase_3|PF12708.3|5.1e-12,Pectate_lyase_3|PF12708.3|3.3e+02,Pectate_lyase_3|PF12708.3|7.2e+02 R_Transcript_37972:1-1653(+)
RGFKPPPPFFFLKFFFFFCLFKKKKKKKNWTYIVALDQSVKIPSNYSFAFIKLKFQFPIQHSQNKAFYFIFFQFSFKFSKMFKEFLVLVFLVLVMKTKDLEGRKYRVLDYFEYSAVNCRAHSASITDFGGVGDGISSNTKAFQTAVDHLKQFESDGGSLLFVPPGKWLTGSFNLTSHFTLYLHKDAFLLAAQDINEWPVIEPLPSYGRGRDAPGGRYSSLIFGTNLTDVIITGANGTIDGQGELWWQKFHKGQLKYTRPYLIELMYSDGIQISNLTLINSPSWNVHPIYSSNILVQGITITAPVNSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAFGMPTKQLVIRRLTCISPTSAVIALGSEMSGGIQDVRAEDILAINSESGVRIKTGAGRGGFVKDIYVKGMTMHTMKWAFWMTGNYGSHPDDKYDPNALPTIQNINYRDMVAEDVTMAARLEGISGDPFTEICISNVTISMAAKPKKIQWACTDVAGISSQVTPSPCNLLADQGPEHATICQFPTDPLPIENIQIQTCSYNRRYL*

Click here to download the sequence:
Link to NCBI Protein BLAST