Transcript Information: R_Transcript_38294.p1


Annotated TAIR IDAT1G54150.1
Annotated Gene NameE3 Ubiquitin ligase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:20215480-20217303 | Forward length=383
E-Value9.9E-131
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.112177149543
Replicate 211.362087756451
Replicate 312.567287459236
Condition 2: 8 Hour
Replicate 116.242493955031
Replicate 217.509518449208
Replicate 320.143308543821
Condition 3: 24 Hour
Replicate 116.144891865867
Replicate 211.880139452281
Replicate 314.573608856363


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_38294.p1 GENE.R_Transcript_38294~~R_Transcript_38294.p1 ORF type:complete len:401 (+),score=64.68,GIDE|PF12483.4|8.1e-35,zf-C3HC4_3|PF13920.2|2.1e-13,zf-C3HC4_2|PF13923.2|1.4e-05 R_Transcript_38294:149-1351(+)
ATGTCGTCGGCAGGAGAGCAAGCAGCGGCAGCGATAGTAACGCAAGTAGCCCTAGCAGCTGACGGAGCAGTACTAGGGCTAGCCCTAGCCTACGTGGCAGTTCGAAGTTTCATCAAATTCGCTAATTCATCCTCAGCCTTGAGGAAAATCGCCGACGCTCCTTCCGTACATGTGTCCGATCTCCGATCAGTTCTTAACGCCGGAGGTGAAGAGAAAACAGATGGAGATGGAGGAGGAGAGAGAGTGTTGGAGAGGCTGGTGGTTGTGAGAGGAATCGTGGAGTCGAAATCGGCTGTTAAAGGAAGCTGGAAAACCTTGTGGCCTAATGACGTTCTTGTTTCGGCTGATTCCGGTGAACGTGCTGTCGTCATTCAGCGCTCTCAAAAGTGTATATACAACGAATGGAGAGGATTTTTCGGATGGTATCCTGATGTCCGTGCAGTCCTGGCAAAAGCCTGGAGAGAACAAGGAACTAGTTCTGTGAGAACGGTCCCATTTGTTCTTGTTGGAGATCGTCAACAGTCACAATCTGATTATATTGTCGTTGACCTGGATGGTTCAAATCATCCACTGCCTCTGACAACAGTCTACCATAAAATGCAACCAATTCAAGCAACTCCTTACACCTTTCTGCAGGCGCTCTTTGGACATGAATACCCAGTTGGCCTGCTTGACGAGGAGAAAATCCTTCCGCTTGGGAAGGATGTCACTGCAGTTGGAATTTTCTCTTTAAGAGACAGTGTTCCAGAGATTAAGTCATGCAAAGATCTTCCTTACTTTCTGTCTGGACTAACCAAGGATCAGATGGTGGTTGAACTCTCTTTTAGGTCGAAGATCTTACTATGGAGTGGTATTATTGTTGGGTCGGTGTCACTTGGCATACTTGGGTATGCAATTGTGAGGAACTGGAACAAGTGGAAAGAATGGCGGGAGAGAAGGAGAGCTCAACAGCAAGGCCCTACTGCTGCTGCCGCTATCAGTGACAGTGAACCTGAAATTGTGGAAGAAGATGAGTCGGGAGATGTTCCTGATGGACAGTTATGCGTAATCTGCCTCATGAGAAGACGGCGATCTGCATTTGTACCCTGTGGACACCTGGTTTGTTGCCAGCGATGCGCCCTATCTGTGGAGCGAGATTTGGCACCAAAATGTCCAGTATGCAGGCAGGCAATCCGTAGTTCTGTGAGGATATATGATTCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_38294.p1 GENE.R_Transcript_38294~~R_Transcript_38294.p1 ORF type:complete len:401 (+),score=64.68,GIDE|PF12483.4|8.1e-35,zf-C3HC4_3|PF13920.2|2.1e-13,zf-C3HC4_2|PF13923.2|1.4e-05 R_Transcript_38294:149-1351(+)
MSSAGEQAAAAIVTQVALAADGAVLGLALAYVAVRSFIKFANSSSALRKIADAPSVHVSDLRSVLNAGGEEKTDGDGGGERVLERLVVVRGIVESKSAVKGSWKTLWPNDVLVSADSGERAVVIQRSQKCIYNEWRGFFGWYPDVRAVLAKAWREQGTSSVRTVPFVLVGDRQQSQSDYIVVDLDGSNHPLPLTTVYHKMQPIQATPYTFLQALFGHEYPVGLLDEEKILPLGKDVTAVGIFSLRDSVPEIKSCKDLPYFLSGLTKDQMVVELSFRSKILLWSGIIVGSVSLGILGYAIVRNWNKWKEWRERRRAQQQGPTAAAAISDSEPEIVEEDESGDVPDGQLCVICLMRRRRSAFVPCGHLVCCQRCALSVERDLAPKCPVCRQAIRSSVRIYDS*

Click here to download the sequence:
Link to NCBI Protein BLAST