Transcript Information: R_Transcript_38303.p1


Annotated TAIR IDAT2G06000.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:2328000-2329610 | Reverse length=536
E-Value1.7E-129
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.3151207930777
Replicate 21.4890993203048
Replicate 33.4116417696397
Condition 2: 8 Hour
Replicate 13.2416275107464
Replicate 23.9646953619123
Replicate 33.5616635496268
Condition 3: 24 Hour
Replicate 15.2102824913938
Replicate 23.597666343853
Replicate 34.087774634196


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_38303.p1 GENE.R_Transcript_38303~~R_Transcript_38303.p1 ORF type:complete len:423 (+),score=53.73,PPR_1|PF12854.3|10,PPR_1|PF12854.3|3.4e-11,PPR_1|PF12854.3|6.9e-12,PPR_1|PF12854.3|3e-12,PPR_1|PF12854.3|1.2e-05,PPR_1|PF12854.3|1.1e-10,PPR_1|PF12854.3|9.4e-10,PPR_1|PF12854.3|1.7e-07,PPR_1|PF12854.3|1.3e-08,PPR_1|PF12854.3|0.19,PPR_2|PF13041.2|1.8,PPR_2|PF13041.2|1.6e-17,PPR_2|PF13041.2|1.5e-08,PPR_2|PF13041.2|4.4e-18,PPR_2|PF13041.2|3.5e-09,PPR_2|PF13041.2|1.8e-19,PPR_2|PF13041.2|0.009,PPR_2|PF13041.2|8.6e-13,PPR_2|PF13041.2|5.5e-08,PPR_2|PF13041.2|4,PPR|PF01535.16|22,PPR|PF01535.16|1e-06,PPR|PF01535.16|5e-05,PPR|PF01535.16|8.9e-11,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|6.8e-09,PPR|PF01535.16|0.00017,PPR|PF01535.16|0.00025,PPR|PF01535.16|2.2e-06,PPR|PF01535.16|0.069,PPR_3|PF13812.2|6e+02,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|0.045,PPR_3|PF13812.2|7.8e-08,PPR_3|PF13812.2|15,PPR_3|PF13812.2|0.0019,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|8.6e-05,PPR_3|PF13812.2|38,PPR_3|PF13812.2|17,MRP-S27|PF10037.5|6.3e-09,MRP-S27|PF10037.5|0.75,MRP-S27|PF10037.5|0.033,MRP-S27|PF10037.5|3.7 R_Transcript_38303:335-1603(+)
ATGTCTTTTTGGTCAGCATCATTTATGGGACGTCTTTCTTGCCGGCGTTTTTTCTCGACGTTTCGGGCCGTTTCGTGCAACATAGCTCGTACTAGTAGTAAGTCAGACATACCCATGAATGCGATGGGAAAGAATAGTTCAAGTAGTGTTCTTGTTGTAAATAATAACAAGTTTTTGAATACCCTTGTTAAGCAAAATAGATTAGATGAGGCTGTTACTTTCTTTAATGAGAAAATGGTATCAAACAATTGCATAGATACTTGTTCTTTCAATATCTTGATTAGAGGGTTATGTAAGGCTGGCCAGGTTAATGAGGCTTTTCGGTTTTTCGAGGGTATGACTAATCATTATGGTTTATTTCCTGATGTTGTTACCTACAATACCTTGATTAATGGGTTGTGTAGGGTTCATGAGGTTAGTAAAGCTTGTGAGTTGCTTATGGAGGTTGGATCGAGGGATGATGTTTCGGCTAATGTTGTGACTTATACGTCGATCATTTCGTGTCTTTGCAAGATGGGTAGGATGGATGAGGCGGCGTCTCTTTTTAAGGAAATGATTAGTGCTGGAATTAGACCTACTATTGTTACTTTTAATGTGCTTATTGATGGGTTTGGCAAGGTTGGCGACTTGGGTTCTATGTTGAATATGTATGAGAAAATGCTTTTCATGGGTTTTAATCCCGATGTTGTTACGTTTACCTCTCGTATTAGTGGTTATTGTCGAGTTGGATTAGTTGAAGAGGGTTTGAAGCTTTTGGAGGAAATGATTCGTAGGGGCTTGCCTCCAAATGAGTATACATTTTCTATTCTGATTATTGCTTTGTGCAAGGAGAATAGAGTGAATGAGGCCTGTGAACTTTTGAAGAATTTAATATCGAGAAATATCATTCCTCATCCGTTTATGTACAACCCTATCATTGATGGGTTATGCAAAGCTGGGCATGTCGACAGAGCTAACTTGATAGTGGCTGAAATGGAGGACAGACGATGTAAGCATGATAAATATACATTCACCATACTTATCATGGGGCATTGTATGAAGGGCAGAATGGTTGAAGCAATTAATATTTTTAATAAGATGGTACAAGTTAAATGTGCCCCAGATGACATTACTGTAAAATCTTTGATATCGTGTCTGCTTAAGGCTGGAATGCCAAAAGAAGCCTTCCAAATAAAGAAGTACATTGCATTGGAGGTGGGGTTGCCTTTATCACCTTCTGGGAGAAGTGCCCCAGCCAGGACAAATATGGATATACAAGTGGCTGCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_38303.p1 GENE.R_Transcript_38303~~R_Transcript_38303.p1 ORF type:complete len:423 (+),score=53.73,PPR_1|PF12854.3|10,PPR_1|PF12854.3|3.4e-11,PPR_1|PF12854.3|6.9e-12,PPR_1|PF12854.3|3e-12,PPR_1|PF12854.3|1.2e-05,PPR_1|PF12854.3|1.1e-10,PPR_1|PF12854.3|9.4e-10,PPR_1|PF12854.3|1.7e-07,PPR_1|PF12854.3|1.3e-08,PPR_1|PF12854.3|0.19,PPR_2|PF13041.2|1.8,PPR_2|PF13041.2|1.6e-17,PPR_2|PF13041.2|1.5e-08,PPR_2|PF13041.2|4.4e-18,PPR_2|PF13041.2|3.5e-09,PPR_2|PF13041.2|1.8e-19,PPR_2|PF13041.2|0.009,PPR_2|PF13041.2|8.6e-13,PPR_2|PF13041.2|5.5e-08,PPR_2|PF13041.2|4,PPR|PF01535.16|22,PPR|PF01535.16|1e-06,PPR|PF01535.16|5e-05,PPR|PF01535.16|8.9e-11,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|6.8e-09,PPR|PF01535.16|0.00017,PPR|PF01535.16|0.00025,PPR|PF01535.16|2.2e-06,PPR|PF01535.16|0.069,PPR_3|PF13812.2|6e+02,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|0.045,PPR_3|PF13812.2|7.8e-08,PPR_3|PF13812.2|15,PPR_3|PF13812.2|0.0019,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|8.6e-05,PPR_3|PF13812.2|38,PPR_3|PF13812.2|17,MRP-S27|PF10037.5|6.3e-09,MRP-S27|PF10037.5|0.75,MRP-S27|PF10037.5|0.033,MRP-S27|PF10037.5|3.7 R_Transcript_38303:335-1603(+)
MSFWSASFMGRLSCRRFFSTFRAVSCNIARTSSKSDIPMNAMGKNSSSSVLVVNNNKFLNTLVKQNRLDEAVTFFNEKMVSNNCIDTCSFNILIRGLCKAGQVNEAFRFFEGMTNHYGLFPDVVTYNTLINGLCRVHEVSKACELLMEVGSRDDVSANVVTYTSIISCLCKMGRMDEAASLFKEMISAGIRPTIVTFNVLIDGFGKVGDLGSMLNMYEKMLFMGFNPDVVTFTSRISGYCRVGLVEEGLKLLEEMIRRGLPPNEYTFSILIIALCKENRVNEACELLKNLISRNIIPHPFMYNPIIDGLCKAGHVDRANLIVAEMEDRRCKHDKYTFTILIMGHCMKGRMVEAINIFNKMVQVKCAPDDITVKSLISCLLKAGMPKEAFQIKKYIALEVGLPLSPSGRSAPARTNMDIQVAA*

Click here to download the sequence:
Link to NCBI Protein BLAST