Transcript Information: R_Transcript_384617.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value6E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.23072857600328
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.24052422732854


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_384617.p1 GENE.R_Transcript_384617~~R_Transcript_384617.p1 ORF type:internal len:91 (+),score=19.61,UBN2_3|PF14244.2|1.3e-08,Retrotrans_gag|PF03732.13|1.5e-06 R_Transcript_384617:1-270(+)
GACATTTGGAATGAGCTTGATGATCAATATGGTCAATCTAATGGACCTAAACTATATCAACTTCAAAAGGATCTTGGCTCAATGTCTCAAGAAGGTATTGATATTGCTAGTTATTTCATTAAGTTCAAATCAATTTGTGATGAATTGTCAGCTCTCTCTACTATACCTTCTTGCACGTGTGGTTCTGCTGCTCAATTTCTTAAACTTCAACAAGATCAAAGACTTGTTCAATTTCTCATGGGACTCAATGAAGACTATAATGTTGCTCGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_384617.p1 GENE.R_Transcript_384617~~R_Transcript_384617.p1 ORF type:internal len:91 (+),score=19.61,UBN2_3|PF14244.2|1.3e-08,Retrotrans_gag|PF03732.13|1.5e-06 R_Transcript_384617:1-270(+)
DIWNELDDQYGQSNGPKLYQLQKDLGSMSQEGIDIASYFIKFKSICDELSALSTIPSCTCGSAAQFLKLQQDQRLVQFLMGLNEDYNVAR

Click here to download the sequence:
Link to NCBI Protein BLAST