Transcript Information: R_Transcript_38715.p1


Annotated TAIR IDAT1G25500.2
Annotated Gene NamePlasma-membrane choline transporter family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:8955437-8957793 | Reverse length=488
E-Value4E-164
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9485731738153
Replicate 21.8297429556687
Replicate 32.1459470950644
Condition 2: 8 Hour
Replicate 11.9204599958624
Replicate 22.1922433177633
Replicate 33.5986853299678
Condition 3: 24 Hour
Replicate 11.9506633592167
Replicate 22.0181282644973
Replicate 32.765766605316


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_38715.p1 GENE.R_Transcript_38715~~R_Transcript_38715.p1 ORF type:complete len:459 (+),score=57.17,Choline_transpo|PF04515.8|1e+03,Choline_transpo|PF04515.8|8e-22,Choline_transpo|PF04515.8|2.4e-13 R_Transcript_38715:172-1548(+)
ATGAACGACTCTCAAAGCCCTTCTTCTTCTTCTTCCTATAATTCTGTCTCCATTTCCCCCAACGGCCAGGAGGTCGCTCATAATCAAAGAAGCATCAATGGCACGTATGCTTTGTCATTTGAGCAATCAAGACATTGGCGAGATGTGTTCTGGTTAGCAGTTTTCATTGTGCATTTGGGAGGGCTAGGCCTTCTTCTAGCAGTACTTGGACTCAACAGATTTAAGATGAACGATAGACTAGATATTGATAAATACACGGATGGGTTTCTGGAGAACCACCATGGTCTCACGGAGGACTATTGGCCTTTGTATGCAGTTGCTGGCGGGGTTGGTACATTCCTTGGATGGACTTGGTTATTATTGCTTGGTTGTCAGGCCAATCACATGATGAAAGTTTCAGTGCACATATTAACTACCTATCTTGCACTGGTTAGTATTTTTTGTTTTTGGACCAAGCAGTTCTTCTGGGGCATTGCTTTTGCAATTGGAGCAGTTTTGCAGTTTTTGTATGTCATCTCAGTTATAGACAGACTTCCATTTACGATGATGGTGCTGCAGAAAGCTGCAAAGATGGTGTGGAGGCTTCCTAAAGTTATGAGCGTAGCATATGCCTTTATTCTGGTCATGCTTTCATGGATGGTTCTATGGTCCTTTGGAGCTTCTGGTGTTGTGGCTTCAAGCATAGGTGATAGCGGAAGATGGTGGCTTCTTGTGGTACTTTCTGTTAGTTTATTTTGGACAGGTGCAGTCCTCTGTAATACAGTTCATGTCATAGTTTCAGGAATGGTTTTTCGTGTTCTCATTCATGGTGGTCAAGAAACACCATCTATGCCTCCAAACTCATTGATGAAATCTTTGCGTTATGCTGTAACAACATCCTTTGGAAGCATCTGCTATGGGTCACTTTTTACAGCTGCTATCCGCACCCTCAGATGGGAGATTGCGGTCTCCGGTAAAAGCTTTAATCATTCAGCAAGAGATGCCTGGGAACTGTTCCAATCAACTGGCGTTGAAGCTCTCGTTGCGTACGATTGTTCTGGTGCTGTCCTTTTGATGGGAACTGTCTTGGGAGGGCTAATTACTGGGACTTGTGCAGGAGTTTGGACATGGTTTCGATCAAATGACAAAGTCTTAATGGTCGGCTCCACCTCAATCCTGATGGGGATGATTTTGGTTGGGCTGGCAATGGTGGTGGTGGAAGGTGCTGTTACAGTCATGTACATATGTTATGCTCTTGATCCCCTATTCATTCATAGATGGGATGTTGATTTCTTCAACCAAATGTCAGAAATGCTTCATCAGCGCCTGCAACATAGGAGCGCACGAGGTCGACAAGTTTTGACCCAGAACACACTCGACTTACGCATACAAAGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_38715.p1 GENE.R_Transcript_38715~~R_Transcript_38715.p1 ORF type:complete len:459 (+),score=57.17,Choline_transpo|PF04515.8|1e+03,Choline_transpo|PF04515.8|8e-22,Choline_transpo|PF04515.8|2.4e-13 R_Transcript_38715:172-1548(+)
MNDSQSPSSSSSYNSVSISPNGQEVAHNQRSINGTYALSFEQSRHWRDVFWLAVFIVHLGGLGLLLAVLGLNRFKMNDRLDIDKYTDGFLENHHGLTEDYWPLYAVAGGVGTFLGWTWLLLLGCQANHMMKVSVHILTTYLALVSIFCFWTKQFFWGIAFAIGAVLQFLYVISVIDRLPFTMMVLQKAAKMVWRLPKVMSVAYAFILVMLSWMVLWSFGASGVVASSIGDSGRWWLLVVLSVSLFWTGAVLCNTVHVIVSGMVFRVLIHGGQETPSMPPNSLMKSLRYAVTTSFGSICYGSLFTAAIRTLRWEIAVSGKSFNHSARDAWELFQSTGVEALVAYDCSGAVLLMGTVLGGLITGTCAGVWTWFRSNDKVLMVGSTSILMGMILVGLAMVVVEGAVTVMYICYALDPLFIHRWDVDFFNQMSEMLHQRLQHRSARGRQVLTQNTLDLRIQS*

Click here to download the sequence:
Link to NCBI Protein BLAST