Transcript Information: R_Transcript_38718.p1


Annotated TAIR IDAT2G36910.1
Annotated Gene NameATP binding cassette subfamily B1
Annotated Gene Symbol(s)ATPGP1, PGP1, ABCB1
Annotation TypeOrtholog
Chromosome Positionchr2:15502162-15507050 | Forward length=1286
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 136.210000655934
Replicate 219.449041726814
Replicate 324.729823565485
Condition 2: 8 Hour
Replicate 121.075527087975
Replicate 223.712092092458
Replicate 334.09613520366
Condition 3: 24 Hour
Replicate 135.2910728644
Replicate 225.598402912792
Replicate 338.66236413743


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_38718.p1 GENE.R_Transcript_38718~~R_Transcript_38718.p1 ORF type:complete len:1357 (+),score=317.25,ABC_membrane|PF00664.19|4.6e-56,ABC_membrane|PF00664.19|6.2e-51,ABC_tran|PF00005.23|1.1e-35,ABC_tran|PF00005.23|1.9e-32,SMC_N|PF02463.15|19,SMC_N|PF02463.15|0.00025,SMC_N|PF02463.15|7,SMC_N|PF02463.15|5.6e-07,AAA_16|PF13191.2|0.0047,AAA_16|PF13191.2|0.0039,AAA_21|PF13304.2|3.8,AAA_21|PF13304.2|4.4,AAA_21|PF13304.2|4.6,AAA_21|PF13304.2|67,AAA_17|PF13207.2|0.02,AAA_17|PF13207.2|1.5,AAA_17|PF13207.2|6e+02,AAA_29|PF13555.2|0.017,AAA_29|PF13555.2|0.4,AAA_29|PF13555.2|1.8e+03,AAA_22|PF13401.2|0.13,AAA_22|PF13401.2|0.13,Zeta_toxin|PF06414.8|0.12,Zeta_toxin|PF06414.8|0.1,Zeta_toxin|PF06414.8|2.9e+03,DUF258|PF03193.12|0.19,DUF258|PF03193.12|0.17 R_Transcript_38718:166-4236(+)
ATGTCACAAGATTCTAAGGAAGAAATAAAAACTACTAATAGTATTGAGCAGTGGAGATGGTCTGAAATGCACGGCCTTGAGCTTGTTTCTTCTCCTCCTAACAACAACAGCAACTCAGAAACATCATCATCAACAACAACAAGAGCAACAAAAGCTAACAACTTTGAAACAGCAACAAGAGAAATGGATACCAGTACTAGTACTAGTGGTGGTGATGGGAATATGAAAGAAAGTAGTAGAAGTAATAGTGGAGAAGAAAAGGGTAAAGAAGGTCAGGAAACAGTTGGGTTTAAGGAATTGTTCAGATTTGCTGATGGCTTAGATTGTCTTCTCATGGTGATTGGCTCTCTTGGAGCTTTCATTCATGGCTGCTCTTTGCCTCTCTTCCTTAGATTCTTTGCTGATCTTGTTAATTCTTTTGGTTCTTATGCTAACAACCCTGATAAAATGATGCAAGAAGTTCTAAAGTATGCATTTTACTTCCTTGTTGTTGGAGCAGCTATTTGGGCATCTTCATGGGCAGAAATTGCTTGCTGGATGTGGACAGGAGAGAGACAATCAACCAAAATGAGGATCAAGTACTTAGAATCAGCATTGAATCAGGATGTTCAGTACTTTGATACTGAAGTTAGAACTTCTGACATTGTTTTTGCTATTAACACTGATGCTGCTCTTGTCCAAGATGCCATCAGTGAGAAGTTGGGTAGTTTCATTCACTACATGGCAACATTTGCAACTGGTTTTGTGGTGGGATTCACTGCTGTTTGGCAATTAGCTCTCGTAACTCTTGCTGTGGTTCCACTAATTGCTGTAATTGGAGGAATTCACACAGCTACATTGTCGAAGCTCTCAGGCAAGAGCCAAGGAGCTCTTTCACAAGCTGGGAATATCGTCGAACAGACAATTCTTCAAGTTCGAGTAGTTTTCGCTTTTGTGGGTGAATCAAGAGCACTACAAGCATACTCATCAGCTCTCAAGACTGTCCAAAGGCTTGGTTACAAGAGTGGCTTTGCAAAGGGTTTGGGTTTAGGAGCTACTTATTTCATTGTGTTTTGCTGTTATGCCCTTCTTCTTTGGTATGGAGGCTACCTTGTTAGGCATCATTACACTAATGGAGGCCTTGCCATTGCCACCATGTTTGCTGTCATGATTGGTGGACTTGGTCTGGGACAGTCAGCTCCTAGTATGAGTGCATTTGCAAAGGCAAAAGTCGCAGCTGCTAAGATTTTCAAGGTAATTGATCACAAGCCCAGCATTGATCGGAACAACGAATCAGGCACGGAATTGGACTCAGTGACCGGGCAGATCGAGCTCAAGGATGTTGAGTTTTCCTATCCATCGAGACCAGATGTCAAAATTCTTAACAATTTCTCACTCACAGTACCGGCTGGAAAAACCATTGCTCTAGTTGGAAGCAGTGGTTCCGGCAAAAGCACAGTGGTAGCGCTTATTGAGAGATTCTATGATCCTGGTTCAGGACAACTTCTTCTAGATGGGCATGACATAAAAACATTGAAGTTGAGATGGCTAAGGCAGCAAATAGGTCTTGTGAGCCAAGAGCCTGCTTTATTTGCTACCACTATCAAAGAGAACATACTGCTAGGCAGGCCAGATGCTTCCGAAGTGGAGATTGCAGAGGCAGCAAGAGTTGCCAACGCCCATTCTTTTATCGTTAAGCTTCCTGATGGCTATGACACTCAGGTTGGAGAGAGAGGCTTGCAACTATCGGGAGGACAGAAACAGAGGATTGCTATTGCCAGGGCAATGCTTAAGAACCCAGCGATACTGCTGTTAGACGAGGCCACCAGTGCATTAGACTCCGAGTCAGAAAAGCTTGTCCAGGAGGCCCTTGACCGGTTTATGATTGGCAGAACAACTCTTGTTATTGCCCACCGTCTTTCCACAATTCGCAAGGCTGATATTGTGGCTGTTCTTCAACAAGGGAGTGTATCTGAGATTGGAACCCACGATGAGCTTATGGCCAAAGGTGACAACAGTGTCTTTGCTAAGCTCATTCGCATGCAAGAGGCTGCTCATGAAACGGCCATGAACAATGCCAGAAAGAGTAGTGCTAGGCCTTCCAGTGCTAGAAACTCTGTTAGCTCACCAATTATAGCACGGAATTCATCTTATGGCCGCTCACCTTATTCACGTCGATTGTCTGATTTCTCCACTTCTGATTTTAGTCTCTCTCTTGATGCCACTCATGCAAATTACAGGCTCGAGAAACTGGCATTCAAGGAGCAAGCCAGCTCCTTCTGCCGTCTTGCTAAGATGAATGTGCCTGAATGGCCTTATGCATTAGTTGGTTCTGTAGGTTCTGTCATCTGTGGTTCACTCAGCGCTTTCTTTGCATATGTCCTCAGTGCTGTTCTCAGTGTCTACTACAACCCGAATCATGCTTACATGATCAAAGAAATCGCTAAGTACTGCTATCTTTTGATCGGGCTCTCATCAACTGCACTCATCTTCAATACCCTACAGCATTTCTTCTGGGATATGGTTGGTGAGAATCTGACCAAAAGGGTGAGGGAGAAAATGCTGGCTGCTGTGATGAAGAATGAGATGGCGTGGTTTGACCAGGAAGAAAATGAGAGCGCCAGAATTGCTGCTAGGCTTTCCCTTGATGCCAATAATGTTCGATCTGCTATTGGAGATCGGATTTCTGTTATCATGCAAAACTCTGCCCTCATGCTTGTCGCGTGTACTGCTGGTTTTGTTTTGCAGTGGCGCCTTGCCCTTGTCCTTATAGCCGTGTTTCCGGTTGTGGTTGCTGCCACTGTTTTACAGAAAATGTTCCTAAAAGGCTTCTCGGGTGACCTAGAAGCTGCCCATGCCAAGGCCACACAACTGGCAGGAGAGGCTGCGTCAAATGTAAGAACTGTAACTGCCTTCAACTCGGAAATGAAAATCGTTGGCCTTTTCACAACCAACCTTGAGACTCCTTTAAGACGTTGCTTCTGGAAGGGACAGATTGCTGGAAGTGGATATGGGATAGCTCAGTTTGCCCTCTATGCTTCATATGCTCTTGGTCTTTGGTATGCTGCTTGGCTTGTAAAACACGGAATCTCTGATTTTTCAAAAACCATTAGGGTTTTCATGGTCCTTATGGTCTCTGCCAATGGTGCGGCTGAGACCTTGACCCTGGCTCCGGACTTCATCAAAGGTGGCCGTGCGATGAAGTCTGTATTCGAGCTCCTTGATCGGAAAACCGAGATTGAACCAGATGACTCTGATGCAACCTCAGTTCCAGAACGACTCCGTGGGGAAGTGGAGCTCAAGCATGTTGACTTCTCGTACCCCAGTCGCCCTGACATTTCCATATTCCGGGACCTCAACTTGCGAGCTCGAGCAGGGAAGACACTTGCCCTGGTGGGCCCCAGTGGGTGTGGGAAAAGCTCTGTCATTGCCCTCGTTCTGAGATTCTATGACCCCTCATCCGGGAGAGTCTTGATAGACGGGAAGGACATAAGAAAATACAACCTGAAATCCCTGAGGCAGCACATGGCCTTGGTCCCTCAAGAACCCTGCCTGTTTGCCACCTCTATATATGACAACATTCGGTATGGCAACGAGAAGGCAACCGAGGCTGAGATTATGGAGGCAGCGACACTAGCAAATGCTCACAAGTTCATATCAGGGATGCCTGACGGCTACAAGACGTTTGTAGGGGAGAGGGGAGTTCAGTTGTCGGGGGGTCAAAAGCAGAGAATTGCACTTGCTAGGGCTTTTGTCAGGAAAGCTGCGATAATGTTGCTAGACGAAGCAACCAGTGCCCTTGATGCAGAGTCCGAGAGGTCTGTCCAAGAGGCCCTCGACCGTGCCTGCTCAGGAAAGACCACCATTGTGGTGGCCCACAGACTGTCAACCATCAGAAATGCTCATGTCATTGCTGTCATAGATGATGGCAAAGTAGCCGAACAAGGGTCTCATTCACATCTTTTGAAGAACTACCCTGATGGGTGTTACGCCCGAATGATTCAGTTTCAAAGGTTCACTCATGGTCAGGCTGTAGGGATGGCATCAGGATCCACTTCTGCCCGTCCACCAGATGAGGGAAGAGAAAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_38718.p1 GENE.R_Transcript_38718~~R_Transcript_38718.p1 ORF type:complete len:1357 (+),score=317.25,ABC_membrane|PF00664.19|4.6e-56,ABC_membrane|PF00664.19|6.2e-51,ABC_tran|PF00005.23|1.1e-35,ABC_tran|PF00005.23|1.9e-32,SMC_N|PF02463.15|19,SMC_N|PF02463.15|0.00025,SMC_N|PF02463.15|7,SMC_N|PF02463.15|5.6e-07,AAA_16|PF13191.2|0.0047,AAA_16|PF13191.2|0.0039,AAA_21|PF13304.2|3.8,AAA_21|PF13304.2|4.4,AAA_21|PF13304.2|4.6,AAA_21|PF13304.2|67,AAA_17|PF13207.2|0.02,AAA_17|PF13207.2|1.5,AAA_17|PF13207.2|6e+02,AAA_29|PF13555.2|0.017,AAA_29|PF13555.2|0.4,AAA_29|PF13555.2|1.8e+03,AAA_22|PF13401.2|0.13,AAA_22|PF13401.2|0.13,Zeta_toxin|PF06414.8|0.12,Zeta_toxin|PF06414.8|0.1,Zeta_toxin|PF06414.8|2.9e+03,DUF258|PF03193.12|0.19,DUF258|PF03193.12|0.17 R_Transcript_38718:166-4236(+)
MSQDSKEEIKTTNSIEQWRWSEMHGLELVSSPPNNNSNSETSSSTTTRATKANNFETATREMDTSTSTSGGDGNMKESSRSNSGEEKGKEGQETVGFKELFRFADGLDCLLMVIGSLGAFIHGCSLPLFLRFFADLVNSFGSYANNPDKMMQEVLKYAFYFLVVGAAIWASSWAEIACWMWTGERQSTKMRIKYLESALNQDVQYFDTEVRTSDIVFAINTDAALVQDAISEKLGSFIHYMATFATGFVVGFTAVWQLALVTLAVVPLIAVIGGIHTATLSKLSGKSQGALSQAGNIVEQTILQVRVVFAFVGESRALQAYSSALKTVQRLGYKSGFAKGLGLGATYFIVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVMIGGLGLGQSAPSMSAFAKAKVAAAKIFKVIDHKPSIDRNNESGTELDSVTGQIELKDVEFSYPSRPDVKILNNFSLTVPAGKTIALVGSSGSGKSTVVALIERFYDPGSGQLLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDASEVEIAEAARVANAHSFIVKLPDGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADIVAVLQQGSVSEIGTHDELMAKGDNSVFAKLIRMQEAAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATHANYRLEKLAFKEQASSFCRLAKMNVPEWPYALVGSVGSVICGSLSAFFAYVLSAVLSVYYNPNHAYMIKEIAKYCYLLIGLSSTALIFNTLQHFFWDMVGENLTKRVREKMLAAVMKNEMAWFDQEENESARIAARLSLDANNVRSAIGDRISVIMQNSALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFLKGFSGDLEAAHAKATQLAGEAASNVRTVTAFNSEMKIVGLFTTNLETPLRRCFWKGQIAGSGYGIAQFALYASYALGLWYAAWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMKSVFELLDRKTEIEPDDSDATSVPERLRGEVELKHVDFSYPSRPDISIFRDLNLRARAGKTLALVGPSGCGKSSVIALVLRFYDPSSGRVLIDGKDIRKYNLKSLRQHMALVPQEPCLFATSIYDNIRYGNEKATEAEIMEAATLANAHKFISGMPDGYKTFVGERGVQLSGGQKQRIALARAFVRKAAIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNYPDGCYARMIQFQRFTHGQAVGMASGSTSARPPDEGREN*

Click here to download the sequence:
Link to NCBI Protein BLAST