Transcript Information: R_Transcript_38722.p1


Annotated TAIR IDAT2G39260.1
Annotated Gene Namebinding;RNA binding
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:16392288-16399588 | Reverse length=1181
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.372455554314
Replicate 212.463141928218
Replicate 315.542439807441
Condition 2: 8 Hour
Replicate 115.340797536272
Replicate 217.497293156491
Replicate 323.609677245408
Condition 3: 24 Hour
Replicate 121.64479572248
Replicate 215.786519795162
Replicate 320.427259920094


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_38722.p1 GENE.R_Transcript_38722~~R_Transcript_38722.p1 ORF type:complete len:1154 (+),score=307.99,MIF4G|PF02854.15|1.5e-07,MIF4G|PF02854.15|3.6e-30,MIF4G|PF02854.15|7.2e-40,Upf2|PF04050.10|1.3e+04,Upf2|PF04050.10|1.6e+04,Upf2|PF04050.10|1.1e-40 R_Transcript_38722:436-3897(+)
ATGGAACTTCGTCAAAGTAACTTGAAGCCTGAAAGACCTGATCCCGCTTTCCTGAGGACACTAGATTCCAGCATAAAGCGCAACACTGCAGTTATCAAAAAACTTAAACAGATAAGTGAAGACCAGCGGGAAGGTTTAATGGATGAGTTACGAAGTGTCAATCTGAGCAAATTCGTGACTGAGGCAGTGGCTGCCATATGTGATGCTAAGCTTAAAACTTCAGACATACTAGCGGCAGTTCAGATTTGTTCTCTGCTTCATCAAAGGTACCAAGACTTCTCATCAAGCCTGTCTCAGGGGCTTTTGAAAGTGTTCTTCCCAGGAAAAGCAGCAGAAGACTTGGAGACAGACAGGAACTCAAAGGCCATGAAGAAGCGGAGTACTCTAAAGCTCCTTTTGGAACTGTATTTTGTCGGTGTTATAGAAGATAGTAGTATTTTTGTAAATATCATCAAAGATCTTACTAGTGTAGAACACCTTAAGGACAGAGAAGCTACTCAGACCAATTTGTCCCTTCTTGCTACCTTTGCTCGGCAAGGCAGAGTTTTTCTTGGGCTTCCGCTGTGTGGACCAGAATATAATGAAGAGTTCTTCAAGGGCCTTAATATTACAGCAGATCAGAAAAAGAATTTCAAGAAAGTGTTTCATGCATATTATGATGCTGTTAACGAGGTTCTGCAGGCTGAGCATACTTCTCTTCGGCAAATGGAGCATGAGAATGCAAAAATTTTGAATGCTAAAGGTGAGCTGAGTGATGATAATGCTGCCGCATATGAGAAGTTGCGAAAGTCCTATGACCATTTGTATCGGGGTGTCTCATCGTTAGCTGAAGCACTTGATATGCAACCACCAGTAATGCCTGAGGATGGGCATACAACCAGAGTAACAAGTGGGGATGATGGTGCATACCCTGGTGGTGGGAAGGAGTCTTCTAATGTTGAAGCAATTTGGGATGATGAAGATACAAGGGCTTTTTATGAATGCTTGCCAGATCTCAGAGCTTTTGTGCCTGCAGTTTTGTTGGGTGAAGCTGAACCCAAGGCTGGTGAGCAGTCTGCAAAGATGCAAGACCATTCTACTGATCCTATCAGTGAATCTGATCAGTGTCAAACGGCTAGTGAGGATGTTGTTGAGTCCTCTGCGGATTCTGGAGTGCTGCAAGATGGGAAATCCAATGAGAAAGGGAAGGATAAAGAAGGCAAGGGGAAGGAAAGTAACGACAAAGAAAAGGTAAAAGATGCAGAGAAAGAGAAAGGGAAGGAAAAAGATGCAGATAAAAAAGGAGATAAGGAAAAACACAAAGGTCTTGATGGAACTAATCTGGACACATTATTGCAGAGGCTTCCGGGTTGTGTCAGCCGTGACCTTATTGATCAGTTATCTGTAGAATTTTGTTATTTGAACTCGAAGTCTAATCGGAAAAAACTTGTGAGGGCATTGTTCAATGTCCCTAGGACTTCTCTAGAGTTGCTGTCATATTACTCGCGTATGGTTGCTACACTGTCTACTTGTATGAAGGATATCTCTTCAATGCTCCTGCAGATGTTGGAAGAGGAGTTCAATTTCTTGATAAATAAGAAGGATCAAATGAACATTGAAACAAAGATCAGGAATATCAGATTCATTGGAGAACTGTGCAAATTTAAAATTGCATCAGCTGGTCTTGTATTTAGCTGTTTAAAGGCTTGTTTGGATGATTTTACTCATCATAATATAGATGTGGCCTGCAATCTATTGGAAACATGTGGTCGATTCTTATACCGTTCTCCTGAAAGTACCATAAGAATGGCTAACATGTTGGAGATATTGATGCGCTTGAAAAATGTGAAGAATTTGGATCCTCGTCATAGCACACTCGTTGAAAATGCTTATTATTTGTGCAAACCACCAGAAAGACCTGCCAGAGTTGCTAAAGTTCGACCTCCTCTGCATCAGTATATTAGAAAATTGCTGTTCTCAGATCTGGACAAGTCATCAATCGAACATGTACTAAGACAGCTCCGTAAATTACCATGGACTGAATGCGAGCCATATCTGTTGAAGTGCTTTTTGAAGGTTTATCGGGGGAAATATGGGCAAATTCATTTGATTGCATTGCTAACAGCTGGTCTTAGTCGCTACCATGATCATTTCGCTGTTTCTGTTGTGGACGAGGTTTTGGAGGAGATCAGGGTAGGGCTAGAGTTGAATGATTATGGGATGCAGCAACGACGCCTTGCACACATGCGTTTCTTAGGGGAGCTGTACAATTATGAACATGTGGACTCATCTGTTATCTTTGATACACTGTATTTGATTCTTGCATTTGGTCATGGAACAGCTGAGCAAGATGTTTTGGATCCTCCTGAAGACTGTTTCCGCATTAGGATGGTGATTACACTTCTTGAGACCTGTGGACACTACTTTGCCCGAGGTTCCTCCAAACGGAAACTAGATCGTTTTTTGATTCATTTCCAGAGATATATCCTAAGCAAGGGAGTGCTGCCACTTGATATTGAGTTTGACTTACAGGATCTGTTTGCTGATCTGCGGCCAAATATGTCACGCTATACCTCAATTGAGGATGCCAATGCTGCTCTTGCAGAACTAGAGGAGCATGAGGGTAAAGTCAGTAGTGAAAAGCAGTCTGAGACTGAGAAACGTTCGAACAGTATTGCTCGAAACAATCTAGCTAATGGTCAACGCCACTCAAATGGTGTTGATGAAAATGGTGCACACGATGATGCAATAGGAGATAGTGAGACTGAGTCAGGCAGTGGCTCTATTGGTCATGATGAAGATGATGACTTGGATGATGAGGATCATGATGCTGGGAGTGAGAGTGATGACGATGAGGATGAAGGGATCGGACCTGGTTCTGATGAAGATGGGGAAATACATGTCAGACAGAAGGCACCAGATCTGGACCCCAAGGAAGAAGCTGAATTTGACAGGGAGCTCAAGGCTCTTATGCAGGAGAGCTTAGACTCCCGTAAACTGGAGCTGAGGGCCAGGCCAACACTCAACATGATGATTCCAATGAGTGTTTTTGAGGGTTCCTCAAAGGACCATCATGGAAGAGGGGTTGAAGGGGAGAGTGGAGATGAGACATTGGATGATGAAGATGGAGTTAATAGGGAGGTTCGTGTGAAAGTTCTCGTAAAGCGTGGGCACAAGCAACAGACTAAACAGATGTACATTCCTCAGGATTGCTCTCTTGTGCGGATCTCAAAGCAGAAAGAAGCTGCTGAGCTCGAGGAGAAGCAGGACATAAAGAGGTTGGTGTTGGAATACAATGACCGAGAAGAAGAGGAGCTTAATGGGGGTGTTGGTAATCAAATCATGGGATGGTCACAAAGTGGGATTGGTAGGATGCCTAACCGTGGTAGCTCTTGGGATGGAAGTGGTGGGAAAAGTTCCGGGTCACGTCATCGACACCACCATTATTCGGGCGGTGGGTATTACTATAGTAGAAGAAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_38722.p1 GENE.R_Transcript_38722~~R_Transcript_38722.p1 ORF type:complete len:1154 (+),score=307.99,MIF4G|PF02854.15|1.5e-07,MIF4G|PF02854.15|3.6e-30,MIF4G|PF02854.15|7.2e-40,Upf2|PF04050.10|1.3e+04,Upf2|PF04050.10|1.6e+04,Upf2|PF04050.10|1.1e-40 R_Transcript_38722:436-3897(+)
MELRQSNLKPERPDPAFLRTLDSSIKRNTAVIKKLKQISEDQREGLMDELRSVNLSKFVTEAVAAICDAKLKTSDILAAVQICSLLHQRYQDFSSSLSQGLLKVFFPGKAAEDLETDRNSKAMKKRSTLKLLLELYFVGVIEDSSIFVNIIKDLTSVEHLKDREATQTNLSLLATFARQGRVFLGLPLCGPEYNEEFFKGLNITADQKKNFKKVFHAYYDAVNEVLQAEHTSLRQMEHENAKILNAKGELSDDNAAAYEKLRKSYDHLYRGVSSLAEALDMQPPVMPEDGHTTRVTSGDDGAYPGGGKESSNVEAIWDDEDTRAFYECLPDLRAFVPAVLLGEAEPKAGEQSAKMQDHSTDPISESDQCQTASEDVVESSADSGVLQDGKSNEKGKDKEGKGKESNDKEKVKDAEKEKGKEKDADKKGDKEKHKGLDGTNLDTLLQRLPGCVSRDLIDQLSVEFCYLNSKSNRKKLVRALFNVPRTSLELLSYYSRMVATLSTCMKDISSMLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIASAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPESTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERPARVAKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWTECEPYLLKCFLKVYRGKYGQIHLIALLTAGLSRYHDHFAVSVVDEVLEEIRVGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILAFGHGTAEQDVLDPPEDCFRIRMVITLLETCGHYFARGSSKRKLDRFLIHFQRYILSKGVLPLDIEFDLQDLFADLRPNMSRYTSIEDANAALAELEEHEGKVSSEKQSETEKRSNSIARNNLANGQRHSNGVDENGAHDDAIGDSETESGSGSIGHDEDDDLDDEDHDAGSESDDDEDEGIGPGSDEDGEIHVRQKAPDLDPKEEAEFDRELKALMQESLDSRKLELRARPTLNMMIPMSVFEGSSKDHHGRGVEGESGDETLDDEDGVNREVRVKVLVKRGHKQQTKQMYIPQDCSLVRISKQKEAAELEEKQDIKRLVLEYNDREEEELNGGVGNQIMGWSQSGIGRMPNRGSSWDGSGGKSSGSRHRHHHYSGGGYYYSRRK*

Click here to download the sequence:
Link to NCBI Protein BLAST