Transcript Information: R_Transcript_38895.p1


Annotated TAIR IDAT3G19840.1
Annotated Gene Namepre-mRNA-processing protein 40C
Annotated Gene Symbol(s)ATPRP40C, PRP40C
Annotation TypeOrtholog
Chromosome Positionchr3:6891228-6897227 | Forward length=835
E-Value4.6E-282
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 116.462185825592
Replicate 210.423695242134
Replicate 314.052714908278
Condition 2: 8 Hour
Replicate 116.352853067605
Replicate 218.369755176861
Replicate 320.855041989381
Condition 3: 24 Hour
Replicate 120.732582413671
Replicate 215.51167735212
Replicate 319.921433343866


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_38895.p1 GENE.R_Transcript_38895~~R_Transcript_38895.p1 ORF type:complete len:846 (+),score=252.69,FF|PF01846.15|5.6e-13,FF|PF01846.15|4.1e-08,FF|PF01846.15|8.8e-15,FF|PF01846.15|4.2e-06,FF|PF01846.15|8.1e-07,WW|PF00397.22|1.6e-08,WW|PF00397.22|4.6e-06 R_Transcript_38895:220-2757(+)
ATGAATGCAGTAGCAAATGTGCCAAAAGATGCAGGTGCAGTGTCTTCATCTGGATTTCATACTACAGAAAATCCTCCACCAACTGTTTCACCCACATCTAATTTCAGCCAAGTGGCAACTTCAACCTCGACTTCTCCTTTGTTTGCATCAGTTCCTGGGTTGCCAAGACTGGCTGCTTCACCTTCAGTCTCATCTGTGGCAATGAATTCATTATCTCCTGCAGGTTTTAGACCTGCCCTGCCAGGACCTCCTCTTCCTTCTAACCTTGGTGTTCAACCACAATTATATCCTCCGCCGTACTCGACTATACCTCCTTCATCTGGTGCGCCACCTCAAGTAACTTGGTTGCCACCCCCACAAATGGGTGGGTTGAGACCTTTCATGCCATATCCTCCCGTTTATCCTGGTCCCTTGGGTTTGGCACCACGTGGCGTGTCCCTTCCTTCTGTTCCTTTGCCTGAGGCTCAGCCTCCTGGCATTACACCTATAAGAAATCCTGGTGTAGTGCTCCCGTTGTCTGTTACAGCTGTTCCCATTTCGACACAAAGTTCTGGAATGCAGCCAGAAGTACCACCTCCTGGAACTGATGACAGTAAACAGGCTAGTGATGCTGGTACCAAGGGTGATACAGTGCAGAATGATCAATCAGATGCTTGGAGTGCCCATAGAACAGAAGCTGGGAGTGTATATTATTATAATGCTATAACTGGGCAATCAACATATGAGAAGCCTCCAGGTTTTAAGGGAGAGCCTGGAAAAGCAATGGCGCAACCAACTCCTGTTGCATGGGAGAAGGTTGGTGGCACTGATTGGGCCATGGTCACCACCAATGATGGGAAAAGATACTACTACAACACGAAAAGTCAGGTTAGCAGCTGGCAAGTCCCCATAGAGGTAGCAGAGTTGAGGAATAAGCAGGAAAATGACAAATTGAAAGAGAACTCAATTTCAGTGCCAAATGTGACCATTTTGAATGATAAAGGATCTGGTGCTACTAGTTTAAGTGCTCCTGCTCTCAACACAGGTGGTCGTGATGCAATAGCTCTCAGAAACTCAGGTGCTCTGGGATCCTCATCTGCTCTTGATTTGATTAAAAAGAAGCTACAAGAATCTGGAGCTCAGGTTACCTCTTCTCTAATTCCTGCTTCGTCAGGATCAGCATTGTTAGAAACTAATGGAACTAAAACGGTTGAGGCTACAGCCAAGGGCTTGCAGAGTGAGGGCAGCAAGGATAAGCCTAAAGATGCTGAAGGAGATGGCAATGTATCTGACTCGTCTTCAGATTCAGAGGATGAGGACCCAGGACCAACCAAGGAGGAGCGTATTATTCAGTTCAAGGAGATGCTTAAAGAACGTGGGGTGGCTCCATTTTCAAAATGGGACAAGGAGCTGCCAAAGATTGTGTTTGATCCTCGATTCAAGGCAATCCCTACTTATGCAGAGCGTCGTTCATTGTTTGAACATTATGTTCGTACGAGGGCTGAAGAGGAACGCAAAGAAAAACGAGCAGCTCAAAAGGCTGCAGTTGAGGGTTTTAAGCAGCTGTTAGATGAAGCAAAGGAGGATATCAATCATAGTACTGATTACCACACATTTAGGAAGAAATGGGGTCATGATCCTCGATTTGAGGCCTTGGACCGCAAGGATCGAGAGGCTCTGCTGAATGAGAGGGTTCTTTCACTGAAGAGGGCTGCTGAAGAAAAAGCTCAAGCTGAACGTGCAGTTGCTGCCCGTAATTTCAAAACCTTGCTCCGAGAAAAAGGGGATATAAGTGCTAATTCTCGTTGGTCCAAGGTGAAAGACAGCCTTAGGGATGATGCCAGGTATAAAGCTGTCAAGCACGAAGAGAGAGAGGCATTATTTAATGAATATGTATCTGAGTTAAAGGCGGCAGATGGTGAAGCAGAGAGAGCCTCAAAGGCCAAGAGGGAGGAACAGGAGAAGTTGAAAGAGAGAGAGAGAGAGCTGCGAAAGAGGAAAGAAAGAGAGGAACAGGAGATGGAGAGAGTACGGTTGAAAGTTCGTAGGAAAGAAGCAGTTGCTTCTTATCAAGCATTACTAGTGGAAACAATAAAAGATCCTCAGGCATCTTGGACAGAGTCAAAGCCTAAACTTGAGAAAGATCCACAAGGGCGTGCATCCAATCCTGATCTGGATGGAGCTGACTTGGAGAAGCTCTTTCGAGAACATGTGAAAATGCTCTATGAGAGGTGCGCTCATGAGTTCAGAACTCTCTTGACAGAGGTTATAACTCTTGAAGCAGCAATTAAAGAGACTGAAGATGGAAAAACAGCTCGTAGTTCATGGTCTACAGCCAAAAGGCTCCTTAAATCTGATCCTAGGTATACAAAAATGCCTAGAAAAGATAGAGAAGCCCTCTGGAAGAGGCATGCTGAGGAATTACAGCGCAAGCAAAAGGCGACTTCTGAGCAAAAGGGAGACAAACATCATGAATCCGTTAAAAATAGAAGTTCCAATGATCCTGGTCGGATAGCAAGAAGTACCCAGGAGAGGAGATGGAGCTGTTATGACTTATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_38895.p1 GENE.R_Transcript_38895~~R_Transcript_38895.p1 ORF type:complete len:846 (+),score=252.69,FF|PF01846.15|5.6e-13,FF|PF01846.15|4.1e-08,FF|PF01846.15|8.8e-15,FF|PF01846.15|4.2e-06,FF|PF01846.15|8.1e-07,WW|PF00397.22|1.6e-08,WW|PF00397.22|4.6e-06 R_Transcript_38895:220-2757(+)
MNAVANVPKDAGAVSSSGFHTTENPPPTVSPTSNFSQVATSTSTSPLFASVPGLPRLAASPSVSSVAMNSLSPAGFRPALPGPPLPSNLGVQPQLYPPPYSTIPPSSGAPPQVTWLPPPQMGGLRPFMPYPPVYPGPLGLAPRGVSLPSVPLPEAQPPGITPIRNPGVVLPLSVTAVPISTQSSGMQPEVPPPGTDDSKQASDAGTKGDTVQNDQSDAWSAHRTEAGSVYYYNAITGQSTYEKPPGFKGEPGKAMAQPTPVAWEKVGGTDWAMVTTNDGKRYYYNTKSQVSSWQVPIEVAELRNKQENDKLKENSISVPNVTILNDKGSGATSLSAPALNTGGRDAIALRNSGALGSSSALDLIKKKLQESGAQVTSSLIPASSGSALLETNGTKTVEATAKGLQSEGSKDKPKDAEGDGNVSDSSSDSEDEDPGPTKEERIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFKAIPTYAERRSLFEHYVRTRAEEERKEKRAAQKAAVEGFKQLLDEAKEDINHSTDYHTFRKKWGHDPRFEALDRKDREALLNERVLSLKRAAEEKAQAERAVAARNFKTLLREKGDISANSRWSKVKDSLRDDARYKAVKHEEREALFNEYVSELKAADGEAERASKAKREEQEKLKERERELRKRKEREEQEMERVRLKVRRKEAVASYQALLVETIKDPQASWTESKPKLEKDPQGRASNPDLDGADLEKLFREHVKMLYERCAHEFRTLLTEVITLEAAIKETEDGKTARSSWSTAKRLLKSDPRYTKMPRKDREALWKRHAEELQRKQKATSEQKGDKHHESVKNRSSNDPGRIARSTQERRWSCYDL*

Click here to download the sequence:
Link to NCBI Protein BLAST