Transcript Information: R_Transcript_389160.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value6E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.54896123172086
Replicate 20
Replicate 30.17223110974551
Condition 2: 8 Hour
Replicate 10.2454723302982
Replicate 20.056042310378911
Replicate 30.13647827534126
Condition 3: 24 Hour
Replicate 10.11507672795842
Replicate 20.11055267614325
Replicate 30.054856402724053


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_389160.p1 GENE.R_Transcript_389160~~R_Transcript_389160.p1 ORF type:complete len:399 (+),score=92.66,UBN2_3|PF14244.2|1.1e-38,Retrotrans_gag|PF03732.13|7.2e-10,UBN2|PF14223.2|8e-05,UBN2|PF14223.2|1.1 R_Transcript_389160:276-1472(+)
ATGAGTGCTGTGCGCAACATTTCTATGTCTGATATGATGAATCCTTTGTTTCTGCATCCTAGTGATGGACCTTCATCTATCAGTTTGTCTGAGAAACTTACTGGAGCTGCAAATTATAGATCATGGAAGCGAGCTATGGAGATACAGCTAGTATCAAAGAGAAAGCTAGGGTTTGTGAATGGAACAGTTGCTAGACCTACTGAGGACACATCTAAAATGGATCAATGGGACACCTGCAACAGTACGGTAATATCCTGGTTACTTAATTCAGTTTCTGATCCTATTCAGAAATCTATTCTGTTCATTGATTCGGCTGCTGAGATTTGGAAACAGCTGGAAACTCGTTTTGCTTTAAGCAATGGTTCTAGAAAATACAAATTGAATAAAGATGTACATTCCTTGAGACAAGATGGCAAGTCTATAAGTGATTTTTACACTAGCATGAGAGGATTATGGGAAAAGTCTGAGTCATTGGTGAATCTGCCTAAATTGACTACTATTACTGCTGAGATGAGTATGTTTCTAGCTGCTCTAGATCAACATAAAGCAGAACAAAAATTATTTCAATTTCTGAATGGTTTGGATGATATATATCAAAATCAAAGGAGCAATATTCTTATGTTGTCACCTCTGCCTTCTGTGGAAGCTGCATGTTCTCTTCTTCAACAAGAAGAATCACAACAAGATATTTTGAGTGTTCATGGCAAAATGAATACTGAACATTCTGCCTTATACAGCAAAGGCAATACCAGTGCTCACAAAGAAGAGAAACCATATGCTAATGCTATTTGTTCTGCTTGTGGAATGAAAGGACATACTGTTGCTAGATGCTGGAAGACCATAGGATATCCTTCCTGGCATCCATTACATAAGAAAAATCCTTCAAAACCTAAGTTCTATGGTCAGCAGAATTATTCTCAACAATTTTCTTCCAGAAATATGCATACTCATCCTCATTCTGCTACTAAATTTCCTCATTGGGAAAAAGGCAAAAAGGCTGCAAATAATGTGTCTGGTCAACATGATGGAGCTTCTGCTCCTGGAACTTCTGGAAACATTGTATTCACTCAGGATCAGTTTGCTCAGCTACTAAAGAACATGCCAGGTTCTTCTGCTGGGACTTCATTTTCTCTCAATACAGAAGCTGATGATGATATTGAGGCCAATTTTGCAGGACTCTCTTACTCAGACTGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_389160.p1 GENE.R_Transcript_389160~~R_Transcript_389160.p1 ORF type:complete len:399 (+),score=92.66,UBN2_3|PF14244.2|1.1e-38,Retrotrans_gag|PF03732.13|7.2e-10,UBN2|PF14223.2|8e-05,UBN2|PF14223.2|1.1 R_Transcript_389160:276-1472(+)
MSAVRNISMSDMMNPLFLHPSDGPSSISLSEKLTGAANYRSWKRAMEIQLVSKRKLGFVNGTVARPTEDTSKMDQWDTCNSTVISWLLNSVSDPIQKSILFIDSAAEIWKQLETRFALSNGSRKYKLNKDVHSLRQDGKSISDFYTSMRGLWEKSESLVNLPKLTTITAEMSMFLAALDQHKAEQKLFQFLNGLDDIYQNQRSNILMLSPLPSVEAACSLLQQEESQQDILSVHGKMNTEHSALYSKGNTSAHKEEKPYANAICSACGMKGHTVARCWKTIGYPSWHPLHKKNPSKPKFYGQQNYSQQFSSRNMHTHPHSATKFPHWEKGKKAANNVSGQHDGASAPGTSGNIVFTQDQFAQLLKNMPGSSAGTSFSLNTEADDDIEANFAGLSYSDC*

Click here to download the sequence:
Link to NCBI Protein BLAST