Transcript Information: R_Transcript_389439.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.36025580831682
Replicate 20.13813355537038
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.1194184909236
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.14399805715064


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_389439.p1 GENE.R_Transcript_389439~~R_Transcript_389439.p1 ORF type:3prime_partial len:152 (+),score=33.69,UBN2_3|PF14244.2|3.1e-44,Retrotrans_gag|PF03732.13|4.8e-07 R_Transcript_389439:247-699(+)
ATGCCAGAAGTTACTACTGATTCTACTCAGCCTATTGCTACAATTGATATGAATGATGAATTGTACATTCATCACTCAGATGTTTCTCATACATTTCTTCTTGCTTCAAGGAAGCTAAATGGTGACAATTATGGTGAGTGGAAGAGGTCTGCTGAGATCACTCTAAGCGCTAAGAACAAATTAGGTTTTGTTACTGGTTCTTGCAAGAAACCAGATGCTCAATTACCACAACTAAATCTTTGGGAAAGGTGCAATAACATGGTCATCTCATGGATTCTTCATTCTGTTGAACCTGAGATAGGCAGAAGTATTCTTTACTACAACACTGCTGCTGAGGTATGGTCTGAATTACATGAAAGGTATTCTCAATCAAATGCACCTCGAAAATATCAAGTTCACAATCATTTAGCTTCCATTAGTCAAGGAACTAGGTCTGTTACAGACTACTACACT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_389439.p1 GENE.R_Transcript_389439~~R_Transcript_389439.p1 ORF type:3prime_partial len:152 (+),score=33.69,UBN2_3|PF14244.2|3.1e-44,Retrotrans_gag|PF03732.13|4.8e-07 R_Transcript_389439:247-699(+)
MPEVTTDSTQPIATIDMNDELYIHHSDVSHTFLLASRKLNGDNYGEWKRSAEITLSAKNKLGFVTGSCKKPDAQLPQLNLWERCNNMVISWILHSVEPEIGRSILYYNTAAEVWSELHERYSQSNAPRKYQVHNHLASISQGTRSVTDYYT

Click here to download the sequence:
Link to NCBI Protein BLAST