Transcript Information: R_Transcript_390101.p1


Annotated TAIR IDAT2G27600.1
Annotated Gene NameAAA-type ATPase family protein
Annotated Gene Symbol(s)SKD1, VPS4, ATSKD1
Annotation TypeHomolog
Chromosome Positionchr2:11781226-11783730 | Forward length=435
E-Value5E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.34439548971167
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.21095171548288
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_390101.p1 GENE.R_Transcript_390101~~R_Transcript_390101.p1 ORF type:3prime_partial len:106 (+),score=21.26,MIT|PF04212.14|3.8e-22 R_Transcript_390101:24-338(+)
ATGAATGACAAATTGGAAAAAGCTTTGGAATTTCTCAAAGAAGCCATTGAAGCAGATGAACAGCAAGATTATGCAAAAGCATTCGGTCTATATACAAAGGGTATCGAATATTTGATGATCTTCCTCAAGTATGAAAAGAACGAGAAGAAAAAAGAAGTGTTGAGAAAAAAAATCAACGAATATCTGGAAAGGGCTGAATTAATCAAAGACTCATTTGATGTGCCAAAACTAGAAATCAAATCAATAAAAAAAGAGAACAATTCTGTACTTGGAGGAGACATGGAGAGAATCGAACCCACCAATTCTGTCGATTTC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_390101.p1 GENE.R_Transcript_390101~~R_Transcript_390101.p1 ORF type:3prime_partial len:106 (+),score=21.26,MIT|PF04212.14|3.8e-22 R_Transcript_390101:24-338(+)
MNDKLEKALEFLKEAIEADEQQDYAKAFGLYTKGIEYLMIFLKYEKNEKKKEVLRKKINEYLERAELIKDSFDVPKLEIKSIKKENNSVLGGDMERIEPTNSVDF

Click here to download the sequence:
Link to NCBI Protein BLAST