Transcript Information: R_Transcript_39067.p1


Annotated TAIR IDAT4G36630.1
Annotated Gene NameVacuolar sorting protein 39
Annotated Gene Symbol(s)EMB2754
Annotation TypeOrtholog
Chromosome Positionchr4:17272088-17276524 | Reverse length=1000
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.712423403794
Replicate 27.5628465181093
Replicate 310.621432557022
Condition 2: 8 Hour
Replicate 19.0634246371893
Replicate 210.791072331318
Replicate 314.828330666008
Condition 3: 24 Hour
Replicate 114.163025354404
Replicate 29.5463060869663
Replicate 313.001949948336


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_39067.p1 GENE.R_Transcript_39067~~R_Transcript_39067.p1 ORF type:complete len:1005 (+),score=198.49,Vps39_2|PF10367.5|1.7e-31,Vps39_1|PF10366.5|5.3e+03,Vps39_1|PF10366.5|6.9e-26,Vps39_1|PF10366.5|7.1e+03,CNH|PF00780.18|1.9e-21,Clathrin|PF00637.16|3e+03,Clathrin|PF00637.16|2.2e-05,Clathrin|PF00637.16|8.9e-09,Clathrin|PF00637.16|1.1e+04 R_Transcript_39067:260-3274(+)
ATGGTCCACAGTGCTTACGACTCCTTCGAGCTCCTGACCGATTGCCCTACAAAGATCGATGCCGTCGAATCCTACGGCTCTAAACTTCTTATCGGTTGCAACGATGGATCCCTTCGAATCTACGCTCCGGAATCCTCCTCAGGCTCAGGCGGATCCCCGACATTCGGCGGTGACCTGGAGCTCCTCCTCAAGGAACCCTATGTACTCGACAGAACCGTCAAGGCTTTCGCGAAAAAGCAAATTCTTGCTATGGAGGTTTTGAATTCGAAAGAACTCCTTTTCTCGCTCTCTGAGTCGATTTCGTTCCATAAGCTCCCCAATTTGGAGACTGTGGCCGTAATTGCCAAGGCCAAAGGCGCCAATGTTTACTCCTGGGATGATCGCCGGGGGTTTCTTTGCTTTGCCAAGCAGAAGAGGGTTTGCATTTTCAGGCATGATGGGGGACGGGGTTTTGTTGAGGTGAAAGAATATGGGGTCCCGGATATGGTGAAGTCGATGGCTTGGTGTGGTGAAAATATATGCATTGGGATCAGGAAGGAGTACATCATCCTGAATGCTAGCAATGGTGCACTCTCTGAAGTGTTCTCTTCTGGGAGAATCTCTCCGCCATTAGTGATCTCTCTTCCCTCAGGAGGATTGCTTCTAGGCAAGGATAATATTGGAGTCTCTGTGGATCAGCATGGGAAGTTGGGACAAGAAGGAAGGATTTGTTGGTCTGAGGTTCCCACTGAAATTGCTATTCATGAGCCTTATGCTATAGGTCTCTTGCCTAGACATGTTGAGATACGTTCTCTTAAGCAACCATATCCGCTGATACAGACTATTGTCTTACGAAATGTCCGGCATCTTATACATAGCAACGGTGCAATTCTTGTTTCTCTGGAAAAATCTATTTATGCACTATTCCCTGTTCCTCTTGGTGCACAGATAGTACAACTGACAGCATCTGGCAATTTCGACGAGGCTTTGACTTTGTGTAAACTTCTTCCTCCAGAAGATTCAAGCCTTAGAGCTGCAAAGGAGAGTGCTATCCACATTAGATATGCACATCATTTGTTTGAAAATGGGAGCTATGAGGAGGCAATGGAGCATTTTTTGGCTTCTCAAGTGGATCTTACATATGTGCTTTCATTGTACCCATCTATCATTGTTCCAAAGTCAGCTGTCCTTCCTGAGCCTGAGAAGCTGATGGATATTGGTTTGGATGCTTCAGATCTCTCTAGGGGCTCATCCAATTTGTCAGATGACATGGAATCTTCACCTCATGCACATCTTGACTTGGAGGAAAATGCTTCTGTGGAGTCCAAGATAGTTAGCCACAATACTCTTATGGCCCTTATTAAGTTCTTGCAGAAGAAAAGATTTAACATTATTGAAAAGGCAGCAGCAGAAGGGACAGATGAGGCTGTTTTTGATGCTGTTGGTGCTAACTTTAAATCTTTCAACTCCCATCGGGCCAAAAAATTAAATAAGGGTCGTGGTAGCATCCCCATAAGTTCAGGTGGTCGTGAGAGAGCTGCTGTACTGGACACTGCTCTTCTCCAAGCTCTCATTCTTACAGGGCAGTCTTCTGCTACTGTGGAATTATTGAAAGGTCTGAACTACTGTGACTTGAAAATATCAGAGGAGTTCTTGCAGAAAAGAAATCACTATACTGCGTTGCTGGAATTATACAAGTGCAATAATATGCACCATGAAGCTTTAAAGCTTTTGCTCCAATTAGTAGAAGACTCAAAGTCAAACCACTCACGTGCCGAGCTTCCCCAGAAGTTCACACCTGAAATGATTATTGACTATCTAAAGCCTCTTTGTGCTACGGACCCAATGCTTGTGCTGGAATATGCAATGCTTGTTCTTGAAAGCTGTCCGACACAAACTATTGAACTATTTCTGTCCGGAAATATTTCAGCAGACTTGGTTAATTCCTATTTGAAGCAGCACGCTCCAAATATGCAGGCCACATATTTAGAACATACGCTTGCGATGAATGAAGATGGAGTCTCGGGAAGTCTGCAGAATGAAATGGTGCAAATCTATCTGTCAGAGGTACTAGATTGGTATCCTGAATTGAGTTCACAACAGAAATGGGATGAGAAAGCTTACTCTCCCACAAGGAAAAAGTTGTTGTCTGCATTAGACAATATCTCAGGTTACAATCCAGAGGCTCTTCTGAAGCGTCTTCCAACTGATGCCTTGTATGAGGAGAGGGCAATCTTACTGGGCAAACTGAACCAGCATGAACTTGCCTTGTCTCTTTATGTACACAAGCTTCATGTTCCTGAAATGGCTCTTCCGTACTGTGATCGGGTCTATGAGTCTCAAGTTCATCAATCTTCAGGGAAAACTTTTAGCAACATTTACCTTACTCTTCTGCAAATCTACTTGAATCCTAGAAGGACAACAAGAAACTTTGAGAAACGAATCAACAATTTGGTCTCAACTTCCAATGCCGAACTTAGAAGGGTCAGTTCTTCTGTCTCTGCTAGAGGTAGGGGCCGTTCAACTCGAAAAATTGCTGAAATAGAGGGTGCTGAAGACACGCGGTTTAGTCCCAGTAGCACGGATAGTGGGAAGAGTGATGTTGATGCCGATGAAACCAGCAGTGAAAAAGTCTCCAATATAATGCTCGATGAGGCACTTGATTTGTTGAGCCAAAGATGGGAAAGAATTAATGGAGCTCAGGCCCTGAAGTTGTTACCAAAAGAAACGAAGCTAAAGCATTTGCTTCCTTTCTTGGGACCCCTCTTGAGAAAATCCAGTGAAGCACATAGGAATTTTGCAGTGATCAGGAGACTGAGAGAGAGTGAAAACCTTCAGGTGAAAGATGATCTCTACAACAAGAGGAAAGCTGTTGTCAAGGTTACCGGTGATAGCATGTGCTCTCTTTGCAACAAGAAAATTGGAACCAGTGTGTTTGCTGTCTATCCAAATGGCACAACACTAGTACACTTTGTTTGCTTCAGGGATTCCCAGAGTGTGAAGGCTGTGAGAGGCTCTCAATTGAGAAAAAGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_39067.p1 GENE.R_Transcript_39067~~R_Transcript_39067.p1 ORF type:complete len:1005 (+),score=198.49,Vps39_2|PF10367.5|1.7e-31,Vps39_1|PF10366.5|5.3e+03,Vps39_1|PF10366.5|6.9e-26,Vps39_1|PF10366.5|7.1e+03,CNH|PF00780.18|1.9e-21,Clathrin|PF00637.16|3e+03,Clathrin|PF00637.16|2.2e-05,Clathrin|PF00637.16|8.9e-09,Clathrin|PF00637.16|1.1e+04 R_Transcript_39067:260-3274(+)
MVHSAYDSFELLTDCPTKIDAVESYGSKLLIGCNDGSLRIYAPESSSGSGGSPTFGGDLELLLKEPYVLDRTVKAFAKKQILAMEVLNSKELLFSLSESISFHKLPNLETVAVIAKAKGANVYSWDDRRGFLCFAKQKRVCIFRHDGGRGFVEVKEYGVPDMVKSMAWCGENICIGIRKEYIILNASNGALSEVFSSGRISPPLVISLPSGGLLLGKDNIGVSVDQHGKLGQEGRICWSEVPTEIAIHEPYAIGLLPRHVEIRSLKQPYPLIQTIVLRNVRHLIHSNGAILVSLEKSIYALFPVPLGAQIVQLTASGNFDEALTLCKLLPPEDSSLRAAKESAIHIRYAHHLFENGSYEEAMEHFLASQVDLTYVLSLYPSIIVPKSAVLPEPEKLMDIGLDASDLSRGSSNLSDDMESSPHAHLDLEENASVESKIVSHNTLMALIKFLQKKRFNIIEKAAAEGTDEAVFDAVGANFKSFNSHRAKKLNKGRGSIPISSGGRERAAVLDTALLQALILTGQSSATVELLKGLNYCDLKISEEFLQKRNHYTALLELYKCNNMHHEALKLLLQLVEDSKSNHSRAELPQKFTPEMIIDYLKPLCATDPMLVLEYAMLVLESCPTQTIELFLSGNISADLVNSYLKQHAPNMQATYLEHTLAMNEDGVSGSLQNEMVQIYLSEVLDWYPELSSQQKWDEKAYSPTRKKLLSALDNISGYNPEALLKRLPTDALYEERAILLGKLNQHELALSLYVHKLHVPEMALPYCDRVYESQVHQSSGKTFSNIYLTLLQIYLNPRRTTRNFEKRINNLVSTSNAELRRVSSSVSARGRGRSTRKIAEIEGAEDTRFSPSSTDSGKSDVDADETSSEKVSNIMLDEALDLLSQRWERINGAQALKLLPKETKLKHLLPFLGPLLRKSSEAHRNFAVIRRLRESENLQVKDDLYNKRKAVVKVTGDSMCSLCNKKIGTSVFAVYPNGTTLVHFVCFRDSQSVKAVRGSQLRKR*

Click here to download the sequence:
Link to NCBI Protein BLAST