Transcript Information: R_Transcript_39277.p1


Annotated TAIR IDAT2G25170.1
Annotated Gene Namechromatin remodeling factor CHD3 (PICKLE)
Annotated Gene Symbol(s)PKL, GYM, CHD3, CHR6, SSL2
Annotation TypeOrtholog
Chromosome Positionchr2:10714411-10723763 | Forward length=1384
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 124.419326756313
Replicate 216.570536595403
Replicate 320.663210422079
Condition 2: 8 Hour
Replicate 118.785819735963
Replicate 220.535827610003
Replicate 324.257972177565
Condition 3: 24 Hour
Replicate 125.629972156976
Replicate 217.625423357552
Replicate 324.792602328097


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_39277.p1 GENE.R_Transcript_39277~~R_Transcript_39277.p1 ORF type:complete len:1409 (+),score=363.23,SNF2_N|PF00176.19|7.7e-67,DUF1086|PF06461.7|3.1e-57,Chromo|PF00385.20|9.9e-10,Chromo|PF00385.20|6e-16,Chromo|PF00385.20|7.5e+03,DUF1087|PF06465.9|9.8e-22,Helicase_C|PF00271.27|1.1e-20,ResIII|PF04851.11|2.1e-11,ResIII|PF04851.11|2e+03,HDA2-3|PF11496.4|6.2e-10,PHD|PF00628.25|2.9e-08,CHDCT2|PF08074.7|2e-07,CHDCT2|PF08074.7|3.2e+03,CHDCT2|PF08074.7|2.4e+03 R_Transcript_39277:178-4404(+)
ATGAGTAGTTTGGTGGAGAGGCTGCGACAAAGGTCAGATCGAAGACCTATATATAACATTGATATATCAGACGATGAAGCAGATTTCGTGCATGGCAAGTCTGGGACTGCTTCAGAGAAACTTGAACGTGTAGTCAGAGAGAATGCGAAAGATGATTTATGCCAGTCCTGTGGAGAAGGTGGAACTCTGCTTGAGTGTGATACTTGTACTTATGCTTATCATCCAAAGTGCTTACTTCCACCTCTTAAAGCACCTTTTCCTGCTAGCTGGAGGTGTCCTGAATGCGTTAACCCTCTCAGTGAAATTGAGAAAATCCTCGATTGTGAAATGCGCCCGACTGCTGCTACTGATGAGAATGCTTCCAAGCTAGGATCTAAGCAATTATTTGTGAAACAATATCTTGTTAAGTGGAAGGGGTTGTCTTACCTGCACTGTTCCTGGATTCCTGAGAAACAGTTCGAAAGTGCCTATAGAGCTCTTCCTCGCCTCAAGACCAAAGTCACAAATTTCAATCGGTCAATGGCAGCAATTAATAATCCAGAAGATGAATACGTCGCTATACGTTCCGAATGGACTACCGTTGATCGGATCCTTGCTTGCAGAGGAGATGATGATGAAAAGATGTATTTTGTTAAGTGGAAGGAACTACCATATGATGAGTGCTCTTGGGAATCAGAGTCAGATATATCTGCTTTTCAGCCTGAAATCGAAAGGTTTCACCGAATCTCCAAACGTCGGAAACATTCGTCTAGTAAGCTGAAAAACAGTTCTCATGATACAGCAGAACTTCAAAAGAAACATAAAGAATTCCAACAGTATGAACACAGTCCTGAATTTCTAACTGGAGGTTCATTGCATCCTTATCAACTTGAAGGGCTGAACTTTTTGCGCTTTTCATGGTCTAAACAAACACATGTGATACTTGCTGATGAAATGGGTCTTGGCAAGACTATCCAAAGTATTGCTTTCCTGGCATCTCTTTTTGAAGAGGGAGTTTATCCCCATTTAGTAGTAGCACCATTGTCAACATTGCGTAATTGGGAGCGTGAATTCGCAACTTGGGCACCACAAATGAATGTTGTCATGTATGTTGGTTCGTCAGCAGGACGTGCTACGATAAGGGATTATGAATTTTACTATCCTAAAAAAGCTGTGTCTACAAAGCCCAAGAAAAAAAAATCTGGTCAGATTACCAGTGATAGCAAACAAGACAGGATCAAGTTTGATGTTCTGCTGACCTCGTATGAAATGATCAACTTAGATTCTAATTCCTTGAAGCCAATTAAATGGGAATGCATGGTTGTCGATGAAGGTCACCGGCTCAAGAATAAGGATTCGAAGCTATTTCTTCAGTTGAAGCAGTACTCCAGTAAACATCGTGTTCTTTTAACAGGAACTCCTCTTCAGAACAATCTTGATGAGCTTTTCATGCTGATGCACTTTCTTGATGCTGGGAAGTTTGGCAGTTTGGAGGAGTTCCAAGAGGAGTTCAAGGATATCAACCAAGAGGAGCAGATCTCAAGGCTTCACAAGATGTTGGCTCCTCATCTTCTTAGAAGAGTGAAGAAAGATGTGATGACAGAGCTGCCACCTAAGAAGGAACTTATCTTGCGTGTTGAGTTAAGTAGTAAGCAAAAGGAGTACTATAAGGCAATATTGACGAGAAATTATGAGCTGCTTACGCGCAAGGGTGGTGCACAGATTTCTCTTATCAATGTGGTGATGGAGTTGCGAAAGCTGTGTTGTCATCCATATATGTTAGAGGGTGTTGAACCGATGATACCAGATTCAACTGAGGCCTTCAAGCTGCTTCTTGAATCTTCTGGAAAATTGCAGTTGTTGGACAAAATGATGGTGAAGCTCAAGGAGCAAGGACACAGAGTTCTTATATATTCACAGTTTCAAAACATGCTAGACATATTGGAAGATTACTTGACATATAAGAAATGGAATTATGAACGGATTGATGGCAAGGTCAGTGGAGCTGAGAGACAAATTCGTATTGATAGATTCAATGCAAAGAATTCTTCCAGATTTTGCTTCTTGCTATCTACAAGAGCGGGTGGTTTGGGGATAAACCTTGCGACAGCTGACACAGTTATCATCTACGACAGTGACTGGAATCCACACGCAGATTTGCAAGCAATGGCTAGAGCTCATCGACTGGGACAGACTAATAAGGTCATGATTTACAGGCTAATAACAAGAGGATCAATTGAAGAAAGAATGATGCAGATGACTAAGAAGAAAATGGTTTTAGAGCATCTAGTTGTTGGAAAGCTGAAGACACAGAATATCAATCAGGAAGAGCTAGACGACATCATAAGGTATGGTTCAAAAGAGCTATTTGTGGATGAAACTGAAGAGGCCAAGGCTCGCCAGATTCACTATGATGATGCTGCAATAGATAGATTACTTGATCGTGAACGGATAGGAGATGAAGAGACTACCTTAGATGAAGAAGAGGACAATGAGTTTCTGAAAGCATTCAAGGTGGCAAATTTTGAATATGTGGACGAAGCTGAAGCAGTTGCTGAGGAAGAGGCAGCAAAAGCAGCTGCAGAGAGCAAAACCACTGTCAGTGGTTCTGAGAGAACCTCATATTGGGAAGATCTATTAAGAGATAAATATGAAATGCACAAAGTGGAAGAGTTTAATTCCTTGGGAAAGGGAAAGCGTAGCCGGAAACAGATGGTATCTGTTGAAGATGATGACTTGGCTGGTCTAGAAGATGTTAGTTCTGATGGTGAAGATGACAACTATGAGGCTGAGTTGACTGACAGCGAAACAACATCTGGAGCACCTTCTGGTAGAAGACCTTATAGAAAGAGAGCACGAGTTGATGGTATGGAATCACTTCCTCTGATGGAAGGTGAAGGGAAATCATTTAGAGTACTTGGTTTTAATCAGAGTCAACGGGCTGCGTTTGTACAAGTTTTGATGAGATTTGGTGTGGGGGAGTTTGATTGGGCCGAATTTGTGCCCCGGTTGAAGCAGAAGACTTACGAGGAGATCAGAGATTATGGAATACTTTTCTTGTCTCATCTTGCTGAGGAGATTACTGACTCACCAACCTTTTCTGATGGTGTTCCAAAGGAAGGGCTTAGAGTTCAAGATGTTCTCGTCAGAATAGCTGTGTTGATGTTGATCAGGGACAAGGTGAAGTCTGCATCCGAGAGGTCTGGTGATTCTCTCTTTGCAGATGATGTAGTATTCCGTTATCCCACTTTAAAAGGTGGAAGGATTTGGAAGAGAGAGCATGATTTGATACTACTACGAGCAGTTTTGAAGCATGGGTATGGAAGATGGCAAGCCATTCTCGATGACAAGGACTTGCGGATTCAAGATGTTATTTGTCAGGAATTGAACCTCCCCATGATAAGCCTTGCTGCAATTGCAGCCAATCAGGCTCAAAGTGGATCACATATGGCAAACTTAGATCCATCTGGCGACCCACTAAAGGGCACTAGCAGTGAGAATGGTCCAGCAGAGGCAACAGCAGGGTCGACTGACACTGCTACTTTATTATATCAATTTAGAGAAATGCAGAGAAGACAAGTTGAGTTCATCAAGAAGAGGGTGCTGCTTTTGGAGAAAGGTCTTAATGCTGAGTACCAGAAGGAATACTTTGGTGAGGGAAAGTCTGATGGTGTCTGTGGTGGAGAACCTGAAAATACAAATAAAGCAGCGGATGTGACAGCTATGACTTCTGTGGACCTTGCTGTAGGACCATTGGACAAGCCTCCCCACAATAAAGTGCTTGCTGCAGAAGAAGTTTCTTCTGCCAGTTATGATGCCGACCCTAGAAGGCAGGTACTAGCGCAGCACTATGATGAGATATGCAAAGTATTAGCTGAAGATGAAAAAGAAACTGTCAAAGCTTATCTTTCAAATGAAGCTGATCCTAGTTTGGGCAAGCGACTAAGTCAGCTAGAAACTATTTTTGAAAAGGTAAATCAAATTCTTTCGTCACCACAGAGTCATCCTAGTCTCCATGAACCCACATCAAAGGACGAGAAACAGGAGACTGGAGATCGGATTGGTGGACAAAGAACTAGTGTGCCCTCTGATTCAACTCCTGCTTTAAAGTCAGAGAACATCATGGAGGTTGAAGCGACCGAAAAAAATGGCCAAACTGAAGGCAAATCTGGAGATGTGATGGCAGAAGCAGATGTTGATGTGAAGAAATCAGAAGAGAAATCTGGTGTAGTTGTATTGGATGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_39277.p1 GENE.R_Transcript_39277~~R_Transcript_39277.p1 ORF type:complete len:1409 (+),score=363.23,SNF2_N|PF00176.19|7.7e-67,DUF1086|PF06461.7|3.1e-57,Chromo|PF00385.20|9.9e-10,Chromo|PF00385.20|6e-16,Chromo|PF00385.20|7.5e+03,DUF1087|PF06465.9|9.8e-22,Helicase_C|PF00271.27|1.1e-20,ResIII|PF04851.11|2.1e-11,ResIII|PF04851.11|2e+03,HDA2-3|PF11496.4|6.2e-10,PHD|PF00628.25|2.9e-08,CHDCT2|PF08074.7|2e-07,CHDCT2|PF08074.7|3.2e+03,CHDCT2|PF08074.7|2.4e+03 R_Transcript_39277:178-4404(+)
MSSLVERLRQRSDRRPIYNIDISDDEADFVHGKSGTASEKLERVVRENAKDDLCQSCGEGGTLLECDTCTYAYHPKCLLPPLKAPFPASWRCPECVNPLSEIEKILDCEMRPTAATDENASKLGSKQLFVKQYLVKWKGLSYLHCSWIPEKQFESAYRALPRLKTKVTNFNRSMAAINNPEDEYVAIRSEWTTVDRILACRGDDDEKMYFVKWKELPYDECSWESESDISAFQPEIERFHRISKRRKHSSSKLKNSSHDTAELQKKHKEFQQYEHSPEFLTGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVYPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSAGRATIRDYEFYYPKKAVSTKPKKKKSGQITSDSKQDRIKFDVLLTSYEMINLDSNSLKPIKWECMVVDEGHRLKNKDSKLFLQLKQYSSKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMTELPPKKELILRVELSSKQKEYYKAILTRNYELLTRKGGAQISLINVVMELRKLCCHPYMLEGVEPMIPDSTEAFKLLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQNMLDILEDYLTYKKWNYERIDGKVSGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLITRGSIEERMMQMTKKKMVLEHLVVGKLKTQNINQEELDDIIRYGSKELFVDETEEAKARQIHYDDAAIDRLLDRERIGDEETTLDEEEDNEFLKAFKVANFEYVDEAEAVAEEEAAKAAAESKTTVSGSERTSYWEDLLRDKYEMHKVEEFNSLGKGKRSRKQMVSVEDDDLAGLEDVSSDGEDDNYEAELTDSETTSGAPSGRRPYRKRARVDGMESLPLMEGEGKSFRVLGFNQSQRAAFVQVLMRFGVGEFDWAEFVPRLKQKTYEEIRDYGILFLSHLAEEITDSPTFSDGVPKEGLRVQDVLVRIAVLMLIRDKVKSASERSGDSLFADDVVFRYPTLKGGRIWKREHDLILLRAVLKHGYGRWQAILDDKDLRIQDVICQELNLPMISLAAIAANQAQSGSHMANLDPSGDPLKGTSSENGPAEATAGSTDTATLLYQFREMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGEGKSDGVCGGEPENTNKAADVTAMTSVDLAVGPLDKPPHNKVLAAEEVSSASYDADPRRQVLAQHYDEICKVLAEDEKETVKAYLSNEADPSLGKRLSQLETIFEKVNQILSSPQSHPSLHEPTSKDEKQETGDRIGGQRTSVPSDSTPALKSENIMEVEATEKNGQTEGKSGDVMAEADVDVKKSEEKSGVVVLDD*

Click here to download the sequence:
Link to NCBI Protein BLAST