Transcript Information: R_Transcript_393425.p1


Annotated TAIR IDAT5G24740.1
Annotated Gene NameProtein of unknown function (DUF1162)
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:8470073-8489703 | Reverse length=3464
E-Value6E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.33732371374224
Replicate 20.25868131929731
Replicate 30.047036422168691
Condition 2: 8 Hour
Replicate 10.35195288425198
Replicate 20.27549341077436
Replicate 30.11181690320567
Condition 3: 24 Hour
Replicate 10.047141287941898
Replicate 20.045288005935477
Replicate 30.089887904258305


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_393425.p1 GENE.R_Transcript_393425~~R_Transcript_393425.p1 ORF type:internal len:487 (+),score=66.27,VPS13_C|PF16909.1|1.2e+03,VPS13_C|PF16909.1|1.7e-46,VPS13_C|PF16909.1|4e-05,ATG_C|PF09333.7|1.8e+03,ATG_C|PF09333.7|1.6e-08 R_Transcript_393425:3-1460(+)
TGCAATCTCCACAAAAACATTACCTTCTTCAATGGAATGCAAGTCCATTTGCAGCAGTTCGACCTGTTTCTCGACGAGGCCTTTGTCACCCATATGTTCCAGACATTCAGCGAGCTGTTCCAGTTCTACTCCCAACAGCAATCTCACGAAGATCTCTACCAAGACAAGCAAATTGAGTACGCAAACAAAGATGTCTCAGACCTCCTCTACTTCAAAACATTATGGATAGGTCCTTTGATGGTCAATCTTTCTTACTCTGGTTGTCATTGGGCTGCCAAGGACATCCCTGGATCTAATGTCGATAGGATTCTAGACATCGTGGGCAAGATCTCTGACATCGACAACTCCCCCATCCGACTCAACTCCATCGAGATGTCCAACATGCTGTTCACCTCCACAGAGTTGATGGCTAGCATTCAGAACTACTACACCATCAATCTAGTAAGACAGTTCTACATGTTGTTAGGATCCTTCAACTTTTTAGGCAATCCTGTCAATTTGGTGCACAGTTTAGGTGAAGGTGTGAGAGACTTCTTTTATGAACCTGCTAAGGGCTTCCGTGCTAGCCCTGAGAAATTTGGTGAGGGTATGTACAAGGGCACTACCTCTTTGTTCAAGAACACTGTGTCGGGAGTGTTCGGCACCACCCAGAACTTGACTTCCACTCTTGGAAACATGACATCTCTGTTGTCGATAGACAGGGACTACATCGAAGAGAGACAACTCAAGCAAAAAAAGCAGGCCAAACATGCAGGAGAAGGAATCATGATGGGTGCACAAGACTTGAGTTCAGGTGTAGTAAAAGGTTTCACTGGATTGTTTACTCAGCCTATTAAGGGTGCTCAGGTCGAAGGTGGAAAAGGATTCTTGAAGGGACTTGGAAAAGGGATCACGGGTGTCATCACCAAGCCTGTTACAGGTGTGGTTGATCTTACTTCGAGGATTGGCCAAGGTATTAAGAATACTGCTTCTAACAACAACAGTTTGAAGAGTCGTATGAGATCTCCTCGTTACATTGACTCTTCGGGTGTGTTGAGGGACTACAACTACAATCAAAGTGAGGGACAAGAAATCCTTCTCAACTTAAAAGACGGCATCTACAAGAACGAGCATTACATGTTTCACTATCCCAATCTGCAATCTGTGAACGATGGCCGCTTCATTTTGGCTTCAAATAACCACATTTTCTCGTTGAAAGGCAACGATTTCGCAAAGATGAAGACTGACTGGTCTGTGGAATACAAAGATATCAAATCCATCAAACACTCGAACAGGGGCGTCGACATTTTGGCTCTCAAGAAGCGCTCCATCTTTGGCCTCCAGCTCAAGAACTCTGAGAAAGAGGTCAGCTATTCTTTCCCTGCTGATGAGAACACCTCACTGTACATCTACTACCATCTGATGGAGATTGTAGAGGATCTTCAAGATCCGCAAAAGAAGGTGGTTCCAATAACCCTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_393425.p1 GENE.R_Transcript_393425~~R_Transcript_393425.p1 ORF type:internal len:487 (+),score=66.27,VPS13_C|PF16909.1|1.2e+03,VPS13_C|PF16909.1|1.7e-46,VPS13_C|PF16909.1|4e-05,ATG_C|PF09333.7|1.8e+03,ATG_C|PF09333.7|1.6e-08 R_Transcript_393425:3-1460(+)
CNLHKNITFFNGMQVHLQQFDLFLDEAFVTHMFQTFSELFQFYSQQQSHEDLYQDKQIEYANKDVSDLLYFKTLWIGPLMVNLSYSGCHWAAKDIPGSNVDRILDIVGKISDIDNSPIRLNSIEMSNMLFTSTELMASIQNYYTINLVRQFYMLLGSFNFLGNPVNLVHSLGEGVRDFFYEPAKGFRASPEKFGEGMYKGTTSLFKNTVSGVFGTTQNLTSTLGNMTSLLSIDRDYIEERQLKQKKQAKHAGEGIMMGAQDLSSGVVKGFTGLFTQPIKGAQVEGGKGFLKGLGKGITGVITKPVTGVVDLTSRIGQGIKNTASNNNSLKSRMRSPRYIDSSGVLRDYNYNQSEGQEILLNLKDGIYKNEHYMFHYPNLQSVNDGRFILASNNHIFSLKGNDFAKMKTDWSVEYKDIKSIKHSNRGVDILALKKRSIFGLQLKNSEKEVSYSFPADENTSLYIYYHLMEIVEDLQDPQKKVVPITL

Click here to download the sequence:
Link to NCBI Protein BLAST