Transcript Information: R_Transcript_39813.p1


Annotated TAIR IDAT4G13930.1
Annotated Gene Nameserine hydroxymethyltransferase 4
Annotated Gene Symbol(s)SHM4
Annotation TypeOrtholog
Chromosome Positionchr4:8048013-8050021 | Reverse length=471
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1201.08454963535
Replicate 2166.61953841389
Replicate 3184.26449213376
Condition 2: 8 Hour
Replicate 1178.96286586442
Replicate 2200.17921795326
Replicate 3274.57647756464
Condition 3: 24 Hour
Replicate 1263.4239571973
Replicate 2248.52709007213
Replicate 3234.32719135384


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_39813.p1 GENE.R_Transcript_39813~~R_Transcript_39813.p1 ORF type:complete len:544 (+),score=125.18,SHMT|PF00464.15|2.1e-186 R_Transcript_39813:228-1859(+)
ATGATGATGCAACATATGTCAGTAATAACATACCCTCAAAAAGACATAAAAGCCCTTCATCATCTCTATCCCACAACCAACACCCCTCCTCCTCACCCTTTAAAATCACATCCGCATTTCATCAAACACCTTGTGTGCACTCCAAAACTCCTCCATTTCTCAACCTTTTTCAAATCCAACAAAAACCCACTTCCAATCTCCTCCCATTCACCCACAATGGAACCCGTCACAGCCTGGGGAAACACCTCCTTGGAGCAAGTCGACCCAGAAATCCATGATCTTATAGAGAAAGAAAAGCGCCGTCAATGTAGAGGAATTGAGCTCATAGCCTCAGAAAACTTCACATCATTTGCAGTGATTGAAGCCTTAGGAAGTGCCCTCACAAACAAATACTCAGAGGGTATGCCAGGAAACAGATACTATGGTGGGAATGAATTCATTGATGAGATTGAGAATCTTTGCCGCTCAAGGGCCCTTGAATGTTACCGTTTAGACCCATCAAAATGGGGTGTTAATGTACAGCCATACAGTGGTAGCCCAGCAAACTTTGCAGCTTATACAGCTGTGTTGAACCCGCATGATAGGATCATGGGTTTGGATCTGCCATCGGGTGGGCATTTGACACATGGGTATTACACATCTGGGGGGAAAAAGATTAGTGCAACTTCGATTTACTTTGAGAGTTTGCCTTACAAGGTGAATTCTGAAACTGGGTATATTGATTATGATAAGCTTGAGGAGAAAGCTATGGACTTTAGGCCTAAGATGATTATTTGCGGGGGGAGTGCTTATCCTAGGGATTGGGATTATGCTAGGTTTAGAGCTGTTGCTGATAAGTGTGGGGCCCTCTTGCTTTGTGATATGGCTCACATTAGTGGCCTTGTTGCTGCTCAGGAAGCTGCAAGCCCCTTTGATTACTGTGACATTGTCACTACCACCACTCACAAGAGTCTTAGGGGCCCAAGGGCTGGCATGATCTTCTACCGCAAGGGCCCAAAACCGCCAAAGAAGGGCCAACCCGAAGGTGCTGTGTACGACTTTGAAGACCGCATCAACTTTGCTGTTTTCCCTTCCCTCCAAGGTGGTCCTCACAACCACCAAATCGGGGCCTTGGCTGTTGCCCTGAAACAGGCCAATTCTCCTGGCTTCAAGGCTTATGCAAAGCAAGTTAGGGCTAATGCTGTTGCCATTGGCAAGTACTTGATGGGCAAAGGATACAGTCTAGTTACCGGTGGTACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTCTTGGATTGACAGGAAACAAGGTGGAGAAGCTCTGCGACTTGTGCAGCATTACAGTCAACAAGAATGCCGTCTTTGGTGACAGCAGTGCCTTGGCTCCTGGAGGTGTAAGAATTGGTACTCCTGCCATGACTTCAAGAGGGTTAGTGGAGAAGGACTTTGAGCAAATAGGTGAGTTCCTCCACAGAGCTGTGACAATCACCTTGAACATCCAGAAGGAGTATGGAAAACTCCTCAAGGACTTCAACAAAGGTTTGGTTAACAACAAGGAGATCGAAGAACTCAAGGCCGATGTCGAGAAGTTTGCATCTTCCTTTGACATGCCTGGCTTCTCCATGGCTGACATGAAGTACAAGGATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_39813.p1 GENE.R_Transcript_39813~~R_Transcript_39813.p1 ORF type:complete len:544 (+),score=125.18,SHMT|PF00464.15|2.1e-186 R_Transcript_39813:228-1859(+)
MMMQHMSVITYPQKDIKALHHLYPTTNTPPPHPLKSHPHFIKHLVCTPKLLHFSTFFKSNKNPLPISSHSPTMEPVTAWGNTSLEQVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALECYRLDPSKWGVNVQPYSGSPANFAAYTAVLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSETGYIDYDKLEEKAMDFRPKMIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAASPFDYCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDRINFAVFPSLQGGPHNHQIGALAVALKQANSPGFKAYAKQVRANAVAIGKYLMGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCSITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLVEKDFEQIGEFLHRAVTITLNIQKEYGKLLKDFNKGLVNNKEIEELKADVEKFASSFDMPGFSMADMKYKD*

Click here to download the sequence:
Link to NCBI Protein BLAST