Transcript Information: R_Transcript_39866.p2


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value6E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9093055391965
Replicate 21.1420581816396
Replicate 31.1501290843256
Condition 2: 8 Hour
Replicate 11.1269644954799
Replicate 21.0291619257449
Replicate 31.6708595550147
Condition 3: 24 Hour
Replicate 11.0566354790993
Replicate 21.1073770154265
Replicate 31.4652856694157


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_39866.p2 GENE.R_Transcript_39866~~R_Transcript_39866.p2 ORF type:complete len:239 (+),score=59.03,UBN2|PF14223.2|1.2e+03,UBN2|PF14223.2|2.8e-37,UBN2_2|PF14227.2|5.2e+03,UBN2_2|PF14227.2|5.8e-15,UBN2_3|PF14244.2|4.4e-10,UBN2_3|PF14244.2|1.4e+03,DUF4219|PF13961.2|3.8e-06 R_Transcript_39866:169-885(+)
ATGGCTAGTAATGGCTCAAATGCATCTCAGCCATTAATCCCACAATTCAAAGGGGACAAATATCACTCATGGAGCCTAAAGATGAAAACTTTGCTCAAATCCCAGGAGCTTTGGGATTTAGTTGAAAATGGGTATGATGAACCGGATCCGGCACCGGCTCAACCTGATCAGCAATTGCGAGAGGCACGCAAAAAGGATGCAAAGGCTCTTCTTTTCATTCAATCGGCAGTGGATGATGAGATATTTCCCCGCATTTCTGCAGCTTCAACCTCAAAGGAAGCATGGGATATCCTGAAACAGGAATACCTGGGTGATAAGAAGGTAATTACTGTTAAGCTCCAATCTCTCCGTCGTGATTTTGAAAATTTGAGCATGAATGAAAAGGAATCTATTCAAAGTTTCCTTTCTAGAGTTTCTGGAATTGTTAATCAAAGGAGAACTTATGGTGAGATTGTCAGTGATGAAACTGTAGTCAGTAAGGTACTGAGGAGTTTACAAAAGGACTTTAATGAAGTGGTAGCTGCAATAGAGATAACTCAGGATTTATCAACTTATTCTTTTGATGAATTAATGAGTGCTTTGATTGCTTATGAGGAGAGATTAAATAGGTCCAGTGAAAAAGTCGATGAGAAGGCATTTCAAGTGAAAGGTGAGTTTTCTTATAAGGGGAAGACAGAATATTCTGGAGGCCATGGACATGGTAGAGGTGGTTTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_39866.p2 GENE.R_Transcript_39866~~R_Transcript_39866.p2 ORF type:complete len:239 (+),score=59.03,UBN2|PF14223.2|1.2e+03,UBN2|PF14223.2|2.8e-37,UBN2_2|PF14227.2|5.2e+03,UBN2_2|PF14227.2|5.8e-15,UBN2_3|PF14244.2|4.4e-10,UBN2_3|PF14244.2|1.4e+03,DUF4219|PF13961.2|3.8e-06 R_Transcript_39866:169-885(+)
MASNGSNASQPLIPQFKGDKYHSWSLKMKTLLKSQELWDLVENGYDEPDPAPAQPDQQLREARKKDAKALLFIQSAVDDEIFPRISAASTSKEAWDILKQEYLGDKKVITVKLQSLRRDFENLSMNEKESIQSFLSRVSGIVNQRRTYGEIVSDETVVSKVLRSLQKDFNEVVAAIEITQDLSTYSFDELMSALIAYEERLNRSSEKVDEKAFQVKGEFSYKGKTEYSGGHGHGRGGF*

Click here to download the sequence:
Link to NCBI Protein BLAST