Transcript Information: R_Transcript_398937.p1


Annotated TAIR IDAT2G41850.1
Annotated Gene Namepolygalacturonase abscission zone A. thaliana
Annotated Gene Symbol(s)PGAZAT, ADPG2
Annotation TypeHomolog
Chromosome Positionchr2:17461918-17464059 | Reverse length=433
E-Value4E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.44792542220169
Replicate 20.25762331799139
Replicate 30.28106426498346
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.1113595743582
Condition 3: 24 Hour
Replicate 10.2816908862295
Replicate 20
Replicate 30.13428039685213


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_398937.p1 GENE.R_Transcript_398937~~R_Transcript_398937.p1 ORF type:3prime_partial len:163 (+),score=21.78,Glyco_hydro_28|PF00295.13|5.2e-07,Pectate_lyase_3|PF12708.3|4.9e+03,Pectate_lyase_3|PF12708.3|2.8e-06 R_Transcript_398937:235-720(+)
ATGGCCCTTCAATTACACCATCTTGTCTCAATTTTTGTCACTATTATTATGATTTCATTGTCTTCTTGTTATGGAGGAAATGAGCATAATAATAACAATGTTGATAGAAAGATAGTTAACCATAACCATTTTTCATCCTATAAGTATTATGTTAGAGAGGATGGCCAAGCTAGAAGAACTCTTAGTAGTACAAAGAGTAATTCATTTAATGTCGATGATTTCGGAGCTAATGGAAATGGAGAAGATGATGATACTCAGGCATTTGCAAAGGCTTGGAAAAAAGTTTGCTCAACTTCAGAAGGTATATTGACTGTCCCAAGCAACAAGAGATATCTTCTCAAACCCATAACCTTTTCAGGTCCATGCAATTCTAAAACTACCATACAGATTTATGGAACACTCTTGGCATCCAACGATCGATCAAATTACAAAAATGATGAGAGACATTGGATTATCTTTGATGAGATAAAAAACCTCGTAGTTGAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_398937.p1 GENE.R_Transcript_398937~~R_Transcript_398937.p1 ORF type:3prime_partial len:163 (+),score=21.78,Glyco_hydro_28|PF00295.13|5.2e-07,Pectate_lyase_3|PF12708.3|4.9e+03,Pectate_lyase_3|PF12708.3|2.8e-06 R_Transcript_398937:235-720(+)
MALQLHHLVSIFVTIIMISLSSCYGGNEHNNNNVDRKIVNHNHFSSYKYYVREDGQARRTLSSTKSNSFNVDDFGANGNGEDDDTQAFAKAWKKVCSTSEGILTVPSNKRYLLKPITFSGPCNSKTTIQIYGTLLASNDRSNYKNDERHWIIFDEIKNLVVE

Click here to download the sequence:
Link to NCBI Protein BLAST