Transcript Information: R_Transcript_4002.p2


Annotated TAIR IDATMG01250.1
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)
Annotated Gene Symbol(s)ORF102
Annotation TypeHomolog
Chromosome PositionchrM:310514-310882 | Forward length=122
E-Value1E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4636808312746
Replicate 20.69327407034946
Replicate 31.5127090865384
Condition 2: 8 Hour
Replicate 11.154993629587
Replicate 21.1602344351559
Replicate 31.9692785107024
Condition 3: 24 Hour
Replicate 10.75804080468834
Replicate 21.0403424004989
Replicate 30.92919501029281


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_4002.p2 GENE.R_Transcript_4002~~R_Transcript_4002.p2 ORF type:complete len:212 (+),score=27.25,RVT_1|PF00078.23|9e-27 R_Transcript_4002:1-636(+)
ATGGGCAAGAAGAAGGGGAAAAAAGGTTGGTTTGTCCTCAAGTTGGATTTGGAGAAAGCCTATGACAGGATGGAATGGGATTTCATTAGGAATATGCTTTTCTCCTTTAATTTTGACTCCAAGTCCATTAAGCTCATCATGGAATGCATCTATACCGTCTCCACCTCAATCCTTGTCAATGGGGGACTCACGGAAGAATTTCAACCTTCTAGGGGAATTAGACAAGGAGACCCCCTCTCACCATACATATTTATTCTCTGTATGGAATTCCTGTCAACACTCATTCATAATGCTTGTGAGGACCGATCGTGGACCCCCTTCTCCTTTTCCAAATCTGGCCTAGTTATCTCCCACCTCCTCTTTGCGAATGATGTCATCCTCTTTGGAGAAGCAAATCTTAGTACCTTGGAAGCCATGGAATCCACCTTGAGTTTGTTTTGCCAAGCCTCTAGTCAAAAAGTCAATGCTAATAAAAGCAATCTCTTCTTCTCACCCAATATCTCACTCGAGATCATGAAAGCTTTTGAGGACTCCCTGGGGACCAAACCCACTGCGGATCTGGGTGCCTACCTGGGCCTCCCTCTCACCACCAAGAGGCCTACTAAGAATCAGTTGAGAAGGTTAGAGATAGACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_4002.p2 GENE.R_Transcript_4002~~R_Transcript_4002.p2 ORF type:complete len:212 (+),score=27.25,RVT_1|PF00078.23|9e-27 R_Transcript_4002:1-636(+)
MGKKKGKKGWFVLKLDLEKAYDRMEWDFIRNMLFSFNFDSKSIKLIMECIYTVSTSILVNGGLTEEFQPSRGIRQGDPLSPYIFILCMEFLSTLIHNACEDRSWTPFSFSKSGLVISHLLFANDVILFGEANLSTLEAMESTLSLFCQASSQKVNANKSNLFFSPNISLEIMKAFEDSLGTKPTADLGAYLGLPLTTKRPTKNQLRRLEID*

Click here to download the sequence:
Link to NCBI Protein BLAST